INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MT670420 | Pseudomonas phage phiPsa347 | 99689 | 47.702 | Pseudomonas | Group I | Otagovirus | Otagovirus | Gorskivirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas syringae pv. actinidiae | Complete | High-quality | 100.000 | DTR (high-confidence) | Otagovirus | Otagovirus psa347 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT670419 | Pseudomonas phage phiPsa315 | 98739 | 47.954 | Pseudomonas | Group I | Otagovirus | Otagovirus | Gorskivirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas syringae pv. actinidiae | Complete | High-quality | 100.000 | DTR (high-confidence) | Otagovirus | Otagovirus psa315 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT670418 | Pseudomonas phage phiPsa300 | 99272 | 47.682 | Pseudomonas | Group I | Otagovirus | Otagovirus | Gorskivirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas syringae pv. actinidiae | Complete | High-quality | 100.000 | DTR (high-confidence) | Otagovirus | Otagovirus psa300 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT670417 | Pseudomonas phage phiPsa267 | 100180 | 47.714 | Pseudomonas | Group I | Otagovirus | Otagovirus | Gorskivirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas syringae pv. actinidiae | Complete | High-quality | 100.000 | DTR (high-confidence) | Otagovirus | Otagovirus psa267 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT668624 | Listeria phage LP-Mix_6.2 | 138470 | 35.876 | Listeria | Group I | Pecentumvirus | Pecentumvirus | Jasinskavirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes | Complete | High-quality | 100.000 | DTR (high-confidence) | Pecentumvirus | Pecentumvirus LP0832 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT668623 | Listeria phage LP-Mix_6.1 | 136804 | 35.929 | Listeria | Group I | Pecentumvirus | Pecentumvirus | Jasinskavirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes | Complete | High-quality | 100.000 | DTR (high-confidence) | Pecentumvirus | Pecentumvirus LP048 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT664984 | Xanthomonas phage Xp12 | 63783 | 68.170 | Xanthomonas | Group I | Bosavirus | Bosavirus | Bradleyvirinae | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas oryzae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Bosavirus | Bosavirus Xp12 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MT664722 | Proteus phage Vb_PmiP-P59 | 90187 | 34.651 | Proteus | Group I | Privateervirus | Privateervirus | Unclassified | Grimontviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Proteus mirabilis | Complete | High-quality | 100.000 | DTR (high-confidence) | Privateervirus | Privateervirus P59 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT664721 | Escherichia phage vB_EcoM_APEC | 35832 | 41.287 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli APEC O78 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MT663720 | Pseudomonas phage DDSR119 | 52905 | 60.391 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas putida | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |