INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT708550	Achromobacter phage Mano	42452	64.303	Achromobacter	Group I	Manovirus	Manovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Achromobacter sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Manovirus	Manovirus Mano	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT708549	Burkholderia phage Maja	68393	54.503	Burkholderia	Group I	Gladiolivirus	Gladiolivirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Burkholderia gladioli	High-quality	High-quality	97.810	AAI-based (high-confidence)	Gladiolivirus	Gladiolivirus maja	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT708548	Streptomyces phage Salutena	51956	67.501	Streptomyces	Group I	Salutenavirus	Salutenavirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Salutenavirus	Salutenavirus salutena	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_24;integrase orf_46
MT708547	Klebsiella phage Muenster	346937	31.865	Klebsiella	Group I	Alcyoneusvirus	Alcyoneusvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Alcyoneusvirus	Alcyoneusvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT708546	Rhizobium phage Paso	45055	55.022	Rhizobium	Group I	Pasovirus	Pasovirus	Dunnvirinae	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bradyrhizobium japonicum	High-quality	High-quality	98.650	AAI-based (high-confidence)	Pasovirus	Pasovirus paso	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT708545	Rhizobium phage Pasto	42407	58.641	Rhizobium	Group I	Pastovirus	Pastovirus	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bradyrhizobium japonicum	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pastovirus	Pastovirus pasto	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_6
MT708544	Rhizobium phage Palo	46322	51.725	Rhizobium	Group I	Palovirus	Palovirus	Dunnvirinae	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhizobium phaseoli	High-quality	High-quality	99.860	AAI-based (high-confidence)	Palovirus	Palovirus palo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT701598	Streptomyces phage Sitrop	48481	65.597	Streptomyces	Group I	Camvirus	Camvirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces sp.	High-quality	High-quality	98.550	AAI-based (high-confidence)	Camvirus	Camvirus sitrop	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_25;integrase orf_45
MT701597	Streptomyces phage Sentinel	50272	66.862	Streptomyces	Group I	Sentinelvirus	Sentinelvirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces sp.	High-quality	High-quality	98.850	AAI-based (high-confidence)	Sentinelvirus	Sentinelvirus sentinel	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_24;integrase orf_46
MT701596	Streptomyces phage Shady	45128	62.252	Streptomyces	Group I	Shadyvirus	Shadyvirus	Unclassified	Colingsworthviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces sp.	High-quality	High-quality	99.990	AAI-based (high-confidence)	Shadyvirus	Shadyvirus shady	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic