INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MT774385 | uncultured phage cr108_1 | 101437 | 37.271 | Unspecified | Group I | Pipoluvirus | Pipoluvirus | Asinivirinae | Steigviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Pipoluvirus | Pipoluvirus rarus | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT774384 | uncultured phage cr8_1 | 92668 | 30.185 | Unspecified | Group I | Fohxhuevirus | Fohxhuevirus | Obtuvirinae | Intestiviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Fohxhuevirus | Fohxhuevirus gastrointestinalis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT774383 | uncultured phage cr11_1 | 93559 | 30.001 | Unspecified | Group I | Delmidovirus | Delmidovirus | Crudevirinae | Intestiviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Delmidovirus | Delmidovirus splanchnicus | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MT774382 | uncultured phage cr10_1 | 99985 | 33.532 | Unspecified | Group I | Canhaevirus | Canhaevirus | Boorivirinae | Suoliviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Canhaevirus | Canhaevirus hiberniae | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_17 |
| MT774381 | uncultured phage cr3_1 | 91101 | 30.729 | Unspecified | Group I | Diorhovirus | Diorhovirus | Crudevirinae | Intestiviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Diorhovirus | Diorhovirus intestinalis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT774380 | uncultured phage cr1_1 | 99882 | 32.195 | Unspecified | Group I | Shelovirus | Shelovirus | Unclassified | Suoliviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (medium-confidence) | Shelovirus | Shelovirus americanus | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT774379 | uncultured phage cr118_1 | 92600 | 28.706 | Unspecified | Group I | Besingivirus | Besingivirus | Uncouvirinae | Suoliviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Besingivirus | Besingivirus coli | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT774378 | uncultured phage cr106_1 | 101662 | 33.424 | Unspecified | Group I | Mahstovirus | Mahstovirus | Asinivirinae | Steigviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Mahstovirus | Mahstovirus faecalis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT774377 | uncultured phage cr107_1 | 93787 | 31.997 | Unspecified | Group I | Jahgtovirus | Jahgtovirus | Churivirinae | Intestiviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Jahgtovirus | Jahgtovirus intestinihominis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT774376 | uncultured phage cr55_1 | 98340 | 31.900 | Unspecified | Group I | Shelovirus | Shelovirus | Unclassified | Suoliviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (medium-confidence) | Shelovirus | Shelovirus intestinalis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |