INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MT774487 | Salmonella phage MG40 | 40315 | 47.156 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium UB-20, LT2 | High-quality | High-quality | 98.430 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_16;integrase orf_29;cro orf_39 |
| MT774394 | uncultured phage cr271_1 | 92815 | 30.545 | Unspecified | Group I | Hacihdavirus | Hacihdavirus | Obtuvirinae | Intestiviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Hacihdavirus | Hacihdavirus animalis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT774393 | uncultured phage cr127_1 | 83412 | 25.922 | Unspecified | Group I | Kahucivirus | Kahucivirus | Doltivirinae | Crevaviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Kahucivirus | Kahucivirus intestinalis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT774392 | uncultured phage cr128_1 | 95150 | 33.197 | Unspecified | Group I | Mahlunavirus | Mahlunavirus | Asinivirinae | Steigviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (medium-confidence) | Mahlunavirus | Mahlunavirus rarus | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT774391 | uncultured phage cr126_1 | 99212 | 34.776 | Unspecified | Group I | Kolpuevirus | Kolpuevirus | Asinivirinae | Steigviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Kolpuevirus | Kolpuevirus hominis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT774390 | uncultured phage cr85_1 | 98164 | 37.722 | Unspecified | Group I | Flerehovirus | Flerehovirus | Unclassified | Steigviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.500 | AAI-based (high-confidence) | Flerehovirus | Flerehovirus oralis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT774389 | uncultured phage cr116_1 | 101082 | 32.585 | Unspecified | Group I | Pamirivirus | Pamirivirus | Asinivirinae | Steigviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Pamirivirus | Pamirivirus faecium | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT774388 | uncultured phage cr112_1 | 102301 | 34.681 | Unspecified | Group I | Snepbuvirus | Snepbuvirus | Unclassified | Steigviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Snepbuvirus | Snepbuvirus splanchnicus | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MT774387 | uncultured phage cr111_1 | 102434 | 39.544 | Unspecified | Group I | Lahndsivirus | Lahndsivirus | Asinivirinae | Steigviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Lahndsivirus | Lahndsivirus rarus | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT774386 | uncultured phage cr110_1 | 89781 | 30.753 | Unspecified | Group I | Delmidovirus | Delmidovirus | Crudevirinae | Intestiviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Delmidovirus | Delmidovirus intestinihominis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |