INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

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Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PX138292	Streptococcus phage P40	34710	38.879	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	93.360	AAI-based (high-confidence)	Moineauvirus	Moineauvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX138291	Streptococcus phage P03	38524	38.228	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Moineauvirus	Moineauvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_31
PX138290	Streptococcus phage P39	33022	38.144	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	Medium-quality	Genome-fragment	89.860	AAI-based (high-confidence)	Vansinderenvirus	Vansinderenvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_22
PX138289	Streptococcus phage P38	34592	38.890	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	93.040	AAI-based (high-confidence)	Moineauvirus	Moineauvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX138288	Streptococcus phage P37	34272	38.956	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	92.460	AAI-based (high-confidence)	Moineauvirus	Moineauvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_26
PX138287	Streptococcus phage P36	35739	39.005	Streptococcus	Group I	Vansinderenvirus	Vansinderenvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	96.200	AAI-based (high-confidence)	Moineauvirus	Moineauvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_23
PX138286	Streptococcus phage P35	36731	38.640	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	98.810	AAI-based (high-confidence)	Moineauvirus	Moineauvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX138285	Streptococcus phage P34	33093	38.135	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	90.050	AAI-based (high-confidence)	Vansinderenvirus	Vansinderenvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_22
PX138284	Streptococcus phage P33	39175	38.476	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Moineauvirus	Moineauvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_31
PX138283	Streptococcus phage P32	35380	38.525	Streptococcus	Group I	Vansinderenvirus	Vansinderenvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	95.370	AAI-based (high-confidence)	Moineauvirus	Moineauvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_27