INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MW362867	Salmonella phage SP2 SHa-2019	85702	38.987	Salmonella	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica QH	High-quality	High-quality	97.360	AAI-based (high-confidence)	Felixounavirus	Felixounavirus SEP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW358931	Providencia phage PSTRCR_128	38838	46.287	Providencia	Group I	Minipunavirus	Minipunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	99.020	AAI-based (high-confidence)	Minipunavirus	Minipunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW358930	Providencia phage PSTRCR_114	43106	42.702	Providencia	Group I	Kakivirus	Kakivirus	Slopekvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kakivirus	Kakivirus PSTRCR114	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW358929	Providencia phage PSTRCR_117lys	41059	49.402	Providencia	Group I	Hendrixvirinae	Unclassified	Hendrixvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_24
MW358928	Providencia phage PSTRCR_120	39396	42.085	Providencia	Group I	Solymavirus	Solymavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	99.130	AAI-based (high-confidence)	Solymavirus	Solymavirus PSTRCR120	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW358927	Providencia phage PSTRCR_127	167162	34.714	Providencia	Group I	Gualtarvirus	Gualtarvirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gualtarvirus	Gualtarvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW358880	Mycoplasma phage MGyu-2021a	24404	22.070	Mycoplasma	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mycoplasma anserisalpingitidis	Not-determined	Genome-fragment			New_genus	New_species	No hits were found with the default settings	lytic
MW357609	Phage vB_SabS_Sds2	114770	40.261	Unspecified	Group I	Epseptimavirus	Epseptimavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus Sds2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MW355480	Salmonella phage vB_SenP_ER25	41727	47.061	Salmonella	Group I	Lederbergvirus	Lederbergvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lederbergvirus	Lederbergvirus P22	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_5;antirepressor orf_9;cro orf_10;integrase orf_28;antirepressor orf_31;cro orf_48;integrase orf_54
MW355479	Salmonella phage ER24	60438	56.580	Salmonella	Group I	Chivirus	Chivirus	Unclassified	Casjensviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium	High-quality	High-quality	93.590	AAI-based (high-confidence)	Chivirus	Chivirus ER24	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_26