Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MW365948Microbacterium phage CrunchyBoi5380059.084MicrobacteriumGroup I TinytimothyvirusTinytimothyvirusEekayvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Microbacterium foliorum NRRL B-24224High-qualityHigh-quality99.510AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
MW365947Microbacterium phage PineapplePluto5386859.109MicrobacteriumGroup I TinytimothyvirusTinytimothyvirusEekayvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Microbacterium foliorum NRRL B-24224High-qualityHigh-quality99.640AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
MW365946Microbacterium phage Rudy6176966.953MicrobacteriumGroup I SquashvirusSquashvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Microbacterium foliorum NRRL B-24224CompleteHigh-quality100.000DTR (high-confidence) SquashvirusSquashvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MW364975Staphylococcus virus vB_SepS_E724459234.540StaphylococcusGroup I RockefellervirusRockefellervirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus epidermidis E72High-qualityHigh-quality100.000AAI-based (high-confidence) RockefellervirusRockefellervirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_34;cro orf_38;antirepressor orf_42
MW364974Staphylococcus virus vB_SepS_4594249834.719StaphylococcusGroup I RockefellervirusRockefellervirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus epidermidisHigh-qualityHigh-quality98.760AAI-based (high-confidence) RockefellervirusRockefellervirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_31;antirepressor orf_37
MW364973Staphylococcus phage vB_SepS_4564326634.699StaphylococcusGroup I RockefellervirusRockefellervirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus epidermidisHigh-qualityHigh-quality100.000AAI-based (high-confidence) RockefellervirusRockefellervirus CNPH82The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_32;antirepressor orf_40
MW364972Staphylococcus virus vB_SepS_484246034.769StaphylococcusGroup I RockefellervirusRockefellervirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus epidermidisHigh-qualityHigh-quality98.760AAI-based (high-confidence) RockefellervirusRockefellervirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_31;antirepressor orf_37
MW364971Staphylococcus virus vB_SepS_274293534.587StaphylococcusGroup I RockefellervirusRockefellervirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus epidermidisHigh-qualityHigh-quality99.840AAI-based (high-confidence) RockefellervirusRockefellervirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_31;antirepressor orf_37
MW363799Staphylococcus phage LSA23661705629.397StaphylococcusGroup I RosenblumvirusRosenblumvirusRakietenvirinaeRountreeviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus aureus ATCC 25923High-qualityHigh-quality96.460AAI-based (high-confidence) RosenblumvirusRosenblumvirus LSA2366Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MW363798Staphylococcus phage LSA230814459229.886StaphylococcusGroup I SilviavirusSilviavirusTwortvirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus aureus ATCC 25923CompleteHigh-quality100.000DTR (high-confidence) SilviavirusSilviavirus SA11Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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