INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MW601220	Gordonia phage Guey18	68896	50.145	Gordonia	Group I	Ronaldovirus	Ronaldovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ronaldovirus	Ronaldovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW601219	Gordonia phage BeeGee	51776	66.243	Gordonia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	99.510	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_41
MW601218	Mycobacterium phage Juliette	58071	67.461	Mycobacterium	Group I	Fionnbharthvirus	Fionnbharthvirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fionnbharthvirus	Fionnbharthvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_46;immunity orf_48;cro orf_49
MW601217	Microbacterium phage Pulchra	53312	68.844	Microbacterium	Group I	Quhwahvirus	Quhwahvirus	Unclassified	Hodgkinviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	99.260	AAI-based (high-confidence)	Quhwahvirus	Quhwahvirus pulchra	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW601216	Mycobacterium phage TarsusIV	52704	62.955	Mycobacterium	Group I	Turbidovirus	Turbidovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Turbidovirus	Turbidovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_70
MW600722	Klebsiella phage KPP-5	38245	50.788	Klebsiella	Group I	Teetrevirus	Teetrevirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	95.790	AAI-based (high-confidence)	Teetrevirus	Teetrevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW598459	Escherichia phage vB_EcoM_RZ	170318	40.147	Escherichia	Group I	Gaprivervirus	Gaprivervirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli str. K-12 substr. MG1655	High-quality	High-quality	99.870	AAI-based (high-confidence)	Gaprivervirus	Gaprivervirus arezed	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW598258	Escherichia phage U136B	49223	42.919	Escherichia	Group I	Tlsvirus	Tlsvirus	Tempevirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	97.700	AAI-based (high-confidence)	Tlsvirus	Tlsvirus U136B	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_23
MW596414	Bacillus phage BCP18	159145	38.766	Bacillus	Group I	Wphvirus	Wphvirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus sp. ATCC 27348	High-quality	High-quality	99.400	AAI-based (high-confidence)	Wphvirus	Wphvirus BPS13	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MW595221	Pseudomonas phage vB_PaeM_V524	65447	55.535	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	99.080	AAI-based (high-confidence)	Pbunavirus	Pbunavirus PaGU11	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic