INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MW627366	Pseudomonas phage phiGM22-3	42662	58.654	Pseudomonas	Group I	Tunggulvirus	Tunggulvirus	Unclassified	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas fluorescens strain 22	Complete	High-quality	100.000	DTR (high-confidence)	Tunggulvirus	Tunggulvirus GM223	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_15;antirepressor orf_35
MW627293	Staphylococcus phage B_UFSM3	42835	34.126	Staphylococcus	Group I	Peeveelvirus	Peeveelvirus	Bronfenbrennervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_24;cro orf_28;antirepressor orf_33
MW623430	Enterococcus phage MDA1	18058	32.960	Enterococcus	Group I	Copernicusvirus	Copernicusvirus	Sarlesvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecium	High-quality	High-quality	98.520	AAI-based (high-confidence)	Copernicusvirus	Copernicusvirus mda1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW618650	Marinomonas phage MfV	10075	46.015	Marinomonas	Unclassified	Corycianvirus	Corycianvirus	Unclassified	Parnassusviridae	Vinavirales	Belvinaviricetes	Produgelaviricota	Abadenavirae	Varidnaviria	Marinomonas	High-quality	High-quality	100.000	AAI-based (high-confidence)	Corycianvirus	Corycianvirus MfV	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW602648	Escherichia phage vB_EcoM_fHy-Eco03	57011	45.060	Escherichia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
MW601225	Gordonia phage ZiggyZoo	50992	67.240	Gordonia	Group I	Jujuvirus	Jujuvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_36;antirepressor orf_44
MW601224	Microbacterium phage Albright	40883	66.262	Microbacterium	Group I	Dismasvirus	Dismasvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	98.220	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
MW601223	Arthrobacter phage Prairie	49392	69.507	Arthrobacter	Group I	Lilmacvirus	Lilmacvirus	Unclassified	Berryhillviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter globiformis B-2979	High-quality	High-quality	99.290	AAI-based (high-confidence)	Lilmacvirus	Lilmacvirus prairie	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW601222	Mycobacterium phage Fefferhead	61366	67.022	Mycobacterium	Group I	Amginevirus	Amginevirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Amginevirus	Amginevirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_37;immunity orf_39;cro orf_40
MW601221	Microbacterium phage BabyYoda	41557	68.732	Microbacterium	Group I	Dismasvirus	Dismasvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	99.760	AAI-based (high-confidence)	Dismasvirus	Dismasvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic