INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MZ417316	Staphylococcus phage PG-2021_12	145091	31.329	Staphylococcus	Group I	Twortvirinae	Unclassified	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mammaliicoccus vitulinus C6867	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
MZ417315	Staphylococcus phage PG-2021_10	141528	30.770	Staphylococcus	Group I	Twortvirinae	Unclassified	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus xylosus M1997-2/10	Complete	High-quality	100.000	DTR (high-confidence)	Kayvirus	Kayvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ402608	Rhodococcus phage WC1	46439	58.602	Rhodococcus	Group I	Rerduovirus	Rerduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodococcus erythropolis	High-quality	High-quality	98.690	AAI-based (high-confidence)	Rerduovirus	Rerduovirus RER2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25;immunity orf_52
MZ401009	Clostridium phage CPQ10	18254	34.683	Clostridium	Group I	Brucesealvirus	Brucesealvirus	Unclassified	Guelinviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridium perfringens JCM 1290	High-quality	High-quality	100.000	AAI-based (high-confidence)	Brucesealvirus	Brucesealvirus cpq9	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ401008	Clostridium phage CPQ9	18270	34.702	Clostridium	Group I	Brucesealvirus	Brucesealvirus	Unclassified	Guelinviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridium perfringens JCM 1290	High-quality	High-quality	100.000	AAI-based (high-confidence)	Brucesealvirus	Brucesealvirus cpq9	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ401007	Clostridium phage CPQ7	17980	34.778	Clostridium	Group I	Brucesealvirus	Brucesealvirus	Unclassified	Guelinviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridium perfringens JCM 1290	High-quality	High-quality	99.020	AAI-based (high-confidence)	Brucesealvirus	Brucesealvirus cpq9	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ401006	Clostridium phage CPQ4	40182	30.307	Clostridium	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridium perfringens JCM 1290	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	antirepressor orf_10
MZ401005	Clostridium phage CPQ3	18246	34.720	Clostridium	Group I	Brucesealvirus	Brucesealvirus	Unclassified	Guelinviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridium perfringens	High-quality	High-quality	100.000	AAI-based (high-confidence)	Brucesealvirus	Brucesealvirus cpq3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_8
MZ398248	Stenotrophomonas phage BUCT608	160122	54.150	Stenotrophomonas	Group I	Menderavirus	Menderavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Stenotrophomonas maltophilia	High-quality	High-quality	100.000	AAI-based (high-confidence)	Menderavirus	Menderavirus IMESM1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ398247	Enterobacteria phage IME177	39224	50.008	Enterobacteria	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	98.590	AAI-based (high-confidence)	Kayfunavirus	Kayfunavirus IME177	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic