INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_009878 | Mycobacterium phage Bethlehem | 52250 | 63.246 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_37;immunity orf_76 | |||
| NC_009877 | Mycobacterium phage U2 | 51277 | 63.699 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 98.750 | AAI-based (high-confidence) | temperate | integrase orf_36;immunity orf_72 | |||
| NC_009875 | Staphylococcus phage SAP-2 | 17938 | 28.944 | Staphylococcus | Group I | Rosenblumvirus | Rosenblumvirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_009821 | Escherichia phage Phi1 | 164270 | 40.499 | Escherichia | Group I | Krischvirus | Krischvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K-12 (F+) | High-quality | High-quality | 98.590 | AAI-based (high-confidence) | lytic | ||||
| NC_009820 | Mycobacterium phage Tweety | 58692 | 61.739 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_41;immunity orf_43;antirepressor orf_45 | |||
| NC_009819 | Streptococcus phage P9 | 40539 | 39.651 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus equi | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1 | |||
| NC_009818 | Pseudomonas phage MP22 | 36409 | 64.190 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa UCBPP-PA14 | High-quality | High-quality | 95.590 | AAI-based (high-confidence) | temperate | cro orf_1;integrase orf_5 | |||
| NC_009817 | Lactococcus phage KSY1 | 79232 | 35.111 | Lactococcus | Group I | Chopinvirus | Chopinvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_009816 | Corynebacterium phage P1201 | 70579 | 50.919 | Corynebacterium | Group I | Chunghsingvirus | Chunghsingvirus | Toshachvirinae | Zierdtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium glutamicum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_6 | |||
| NC_009815 | Listeria phage A006 | 38124 | 35.497 | Listeria | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_29;antirepressor orf_37 |