INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_010105 | Escherichia phage JS98 | 170523 | 39.513 | Escherichia | Group I | Dhakavirus | Dhakavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_94 | |||
| NC_009993 | Mycobacterium phage Giles | 53746 | 67.447 | Mycobacterium | Group I | Gilesvirus | Gilesvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.970 | AAI-based (high-confidence) | temperate | integrase orf_29 | |||
| NC_009990 | Thalassomonas phage BA3 | 37313 | 40.889 | Thalassomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Thalassomonas loyana LMG 22536 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_009987 | Vespertiliovirus SkV1CR23x | 7870 | 22.211 | Unspecified | Group II | Vespertiliovirus | Vespertiliovirus | Unclassified | Plectroviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Spiroplasma kunkelii | High-quality | High-quality | 99.040 | AAI-based (high-confidence) | lytic | ||||
| NC_009986 | Sulfolobus spindle-shaped virus 4 | 15135 | 38.474 | Sulfolobus | Unclassified | Alphafusellovirus | Alphafusellovirus | Unclassified | Fuselloviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus islandicus ARN3/4 | High-quality | High-quality | 95.500 | AAI-based (high-confidence) | temperate | integrase orf_12 | |||
| NC_009965 | Acidianus rod-shaped virus 1 | 24655 | 39.128 | Acidianus | Group I | Itarudivirus | Itarudivirus | Unclassified | Rudiviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Acidianus sp. Acii26 | Complete | High-quality | 100.000 | ITR (medium-confidence) | lytic | ||||
| NC_009936 | Pseudomonas phage LKA1 | 41593 | 60.902 | Pseudomonas | Group I | Stubburvirus | Stubburvirus | Unclassified | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_009935 | Pseudomonas phage LKD16 | 43200 | 62.317 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_009904 | Enterococcus phage EF24C | 142072 | 35.738 | Enterococcus | Group I | Kochikohdavirus | Kochikohdavirus | Brockvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_009884 | Deltalipothrixvirus pozzuoliense | 31787 | 35.656 | Unspecified | Group I | Deltalipothrixvirus | Deltalipothrixvirus | Unclassified | Lipothrixviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Acidianus pozzuoliensis | Medium-quality | Genome-fragment | 86.160 | AAI-based (medium-confidence) | lytic |