INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_012756 | Streptococcus phage PH10 | 31276 | 39.490 | Streptococcus | Group I | Phadecavirus | Phadecavirus | Mcshanvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus oralis | High-quality | High-quality | 97.610 | AAI-based (high-confidence) | temperate | integrase orf_2;cro orf_5;integrase orf_28 | |||
| NC_012753 | Streptococcus phage 5093 | 37184 | 38.030 | Streptococcus | Group I | Vansinderenvirus | Vansinderenvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus CSK939 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_8;integrase orf_47;cro orf_48;cro orf_49;cro orf_50;antirepressor orf_52;cro orf_53 | |||
| NC_012749 | Escherichia phage wV8 | 88487 | 38.894 | Escherichia | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_012743 | Burkholderia phage BcepIL02 | 62715 | 66.203 | Burkholderia | Group I | Lessievirus | Lessievirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cenocepacia | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_4 | |||
| NC_012742 | Xanthomonas phage phiL7 | 44080 | 55.640 | Xanthomonas | Group I | Eisenstarkvirus | Eisenstarkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas campestris pv. campestris | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | lytic | ||||
| NC_012741 | Escherichia phage JS10 | 171451 | 39.515 | Escherichia | Group I | Dhakavirus | Dhakavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_90 | |||
| NC_012740 | Escherichia phage JSE | 166418 | 40.512 | Escherichia | Group I | Krischvirus | Krischvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K12 | High-quality | High-quality | 99.880 | AAI-based (high-confidence) | lytic | ||||
| NC_012697 | Silicibacter phage DSS3phi2 | 74611 | 47.915 | Silicibacter | Group I | Aorunvirus | Aorunvirus | Rhodovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ruegeria pomeroyi DSS-3 | High-quality | High-quality | 99.890 | AAI-based (high-confidence) | lytic | ||||
| NC_012696 | Sulfitobacter phage EE36phi1 | 73325 | 47.040 | Sulfitobacter | Group I | Aorunvirus | Aorunvirus | Rhodovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sulfitobacter sp. EE-36 | High-quality | High-quality | 98.250 | AAI-based (high-confidence) | lytic | ||||
| NC_012663 | Lactococcus phage P087 | 60074 | 34.384 | Lactococcus | Group I | Teubervirus | Teubervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 99.870 | AAI-based (high-confidence) | temperate | integrase orf_42 |