INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_013152 | Lactococcus phage CB14 | 29459 | 34.804 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis SMQ-404 | High-quality | High-quality | 97.140 | AAI-based (high-confidence) | lytic | ||||
| NC_013085 | Synechococcus phage S-RSM4 | 194454 | 41.120 | Synechococcus | Group I | Gibbetvirus | Gibbetvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_013059 | Salmonella phage g341c | 40975 | 47.402 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Anatum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_16;cro orf_37;cro orf_38 | |||
| NC_013055 | Burkholderia phage KS9 | 39896 | 60.680 | Burkholderia | Group I | Stanholtvirus | Stanholtvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia pyrrocinia strain LMG 21824 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1 | |||
| NC_013021 | Cyanophage PSS2 | 107530 | 52.301 | Prochlorococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus marinus str. MIT 9313 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_106 | |||
| NC_012884 | Streptococcus phage M102 | 31147 | 39.211 | Streptococcus | Group I | Aliceevansviridae | Unclassified | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.650 | AAI-based (high-confidence) | lytic | ||||
| NC_012868 | Escherichia phage St-1 | 6094 | 45.208 | Escherichia | Group II | Alphatrevirus | Alphatrevirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Escherichia coli strain K12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | unknown | ||||
| NC_012788 | Mycobacterium phage Angel | 41441 | 66.690 | Mycobacterium | Group I | Liefievirus | Liefievirus | Gclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.310 | AAI-based (high-confidence) | temperate | integrase orf_32 | |||
| NC_012784 | Staphylococcus phage phiPVL-CN125 | 44492 | 33.568 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus CN125 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_2;cro orf_5;cro orf_6;antirepressor orf_14 | |||
| NC_012757 | Vibrio phage VEJ | 6842 | 42.955 | Vibrio | Group II | Fibrovirus | Fibrovirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio cholerae | High-quality | High-quality | 96.590 | AAI-based (high-confidence) | lytic |