INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_028889 | Mycobacterium phage Florinda | 59416 | 61.748 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_43;immunity orf_45;antirepressor orf_48 | |||
| NC_028888 | Lactobacillus phage CL1 | 39474 | 44.774 | Lactobacillus | Group I | Colunavirus | Colunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus paracasei | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_21;antirepressor orf_34;antirepressor orf_38 | |||
| NC_028887 | Bacillus phage AvesoBmore | 167431 | 37.690 | Bacillus | Group I | Bequatrovirus | Bequatrovirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis subsp. kurstaki | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_028886 | Bacillus phage phi4B1 | 38663 | 35.892 | Bacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis 4B1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_28;antirepressor orf_33 | |||
| NC_028885 | Pseudomonas phage DL64 | 72378 | 54.953 | Pseudomonas | Group I | Litunavirus | Litunavirus | Migulavirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 99.380 | AAI-based (high-confidence) | lytic | ||||
| NC_028883 | Clostridium phage phiMMP01 | 44461 | 28.920 | Clostridium | Group I | Yongloolinvirus | Yongloolinvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | Medium-quality | Genome-fragment | 81.210 | AAI-based (high-confidence) | temperate | cro orf_5;integrase orf_43;antirepressor orf_49;antirepressor orf_53 | |||
| NC_028882 | Pseudomonas phage vB_PaeM_PS24 | 84583 | 54.700 | Pseudomonas | Group I | Nankokuvirus | Nankokuvirus | Unclassified | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAER2_24 | High-quality | High-quality | 96.640 | AAI-based (high-confidence) | lytic | ||||
| NC_028881 | Escherichia phage vb_EcoM-VR5 | 170473 | 39.303 | Escherichia | Group I | Dhakavirus | Dhakavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.740 | AAI-based (high-confidence) | lytic | ||||
| NC_028880 | Citrobacter phage phiCFP-1 | 38625 | 50.278 | Citrobacter | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii P10159 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_028879 | Pseudomonas phage PaMx42 | 43225 | 54.635 | Pseudomonas | Group I | Septimatrevirus | Septimatrevirus | Jondennisvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |