INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_028912 | Mycobacterium phage Swirley | 49717 | 61.044 | Mycobacterium | Group I | Benedictvirus | Benedictvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.330 | AAI-based (high-confidence) | temperate | integrase orf_27;immunity orf_63 | |||
| NC_028911 | Lactobacillus phage iLp1308 | 34176 | 45.049 | Lactobacillus | Group I | Colunavirus | Colunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus paracasei | High-quality | High-quality | 90.510 | AAI-based (high-confidence) | temperate | integrase orf_20;cro orf_43 | |||
| NC_028910 | Mycobacterium phage XFactor | 55617 | 61.715 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.570 | AAI-based (high-confidence) | temperate | immunity orf_37;integrase orf_40;cro orf_43 | |||
| NC_028908 | Achromobacter phage phiAxp-3 | 72825 | 55.202 | Achromobacter | Group I | Dongdastvirus | Dongdastvirus | Rothmandenesvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_028907 | Mycobacterium phage Kikipoo | 68839 | 66.520 | Mycobacterium | Group I | Pegunavirus | Pegunavirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.080 | AAI-based (high-confidence) | lytic | ||||
| NC_028906 | Mycobacterium phage Toto | 75933 | 63.017 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.740 | AAI-based (high-confidence) | temperate | integrase orf_50;immunity orf_53 | |||
| NC_028905 | Clostridium phage phiCD111 | 41560 | 30.893 | Clostridium | Group I | Leicestervirus | Leicestervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | parA orf_31;integrase orf_51 | |||
| NC_028904 | Streptomyces phage Amela | 49452 | 65.613 | Streptomyces | Group I | Camvirus | Camvirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces venezuelae ATCC 10712 | High-quality | High-quality | 99.880 | AAI-based (high-confidence) | temperate | immunity orf_30;integrase orf_51 | |||
| NC_028903 | Escherichia phage 172-1 | 77266 | 41.984 | Escherichia | Group I | Kuravirus | Kuravirus | Gordonclarkvirinae | Mtkvariviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 172 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_028902 | Qubevirus faecium | 4184 | 51.243 | Unspecified | Group IV | Qubevirus | Qubevirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Unspecified | High-quality | High-quality | 98.730 | AAI-based (high-confidence) | unknown |