Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PX570625Staphylococcus phage AZOS14184629.760StaphylococcusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Staphylococcus aureusCompleteHigh-quality100.000DTR (high-confidence) BaoshanvirusBaoshanvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX564515Shigella phage fHBSA87768542.177ShigellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Shigella flexneriHigh-qualityHigh-quality100.000AAI-based (high-confidence) KuravirusKuravirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX564512Shigella phage fMTSA116988239.541ShigellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Shigella flexneriCompleteHigh-quality100.000DTR (high-confidence) DhakavirusDhakavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_210
PX563682Yersinia phage JC533941542.144YersiniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Yersinia pestis EV76-CNHigh-qualityHigh-quality98.920AAI-based (high-confidence) SolymavirusSolymavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX560363Staphylococcus phage Fago173191530.205StaphylococcusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Staphylococcus sp.Low-qualityGenome-fragment22.660AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PX557717Klebsiella phage KpS716766339.542KlebsiellaGroup I JiaodavirusJiaodavirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeHigh-qualityHigh-quality99.200AAI-based (high-confidence) JiaodavirusJiaodavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_91
PX557049Leuconostoc phage phiLM32_018500533.311LeuconostocUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Leuconostoc mesenteroides WIKIM 32High-qualityHigh-quality98.990AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PX557020Pasteurella phage vB_PmuS_ZP413859240.933PasteurellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pasteurella multocidaCompleteHigh-quality100.000DTR (high-confidence) WuhanvirusWuhanvirus PHB02Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX556891Salmonella phage DN288621438.737SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella entericaCompleteHigh-quality100.000DTR (high-confidence) FelixounavirusFelixounavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX556890Salmonella phage DN198621638.741SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella entericaCompleteHigh-quality100.000DTR (high-confidence) FelixounavirusFelixounavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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