INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PX571967 | Wolbachia phage Harashp_a | 93024 | 34.378 | Wolbachia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Wolbachia pipientis | High-quality | High-quality | 91.370 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX571966 | Wolbachia phage Slabp_c | 14558 | 34.806 | Wolbachia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Wolbachia pipientis | Not-determined | Genome-fragment | New_genus | New_species | No hits were found with the default settings | lytic | |||
| PX571965 | Wolbachia phage Slabp_b | 58503 | 35.084 | Wolbachia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Wolbachia pipientis | Medium-quality | Genome-fragment | 75.580 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_43 |
| PX571964 | Wolbachia phage Slabp_a | 36339 | 34.288 | Wolbachia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Wolbachia pipientis | Not-determined | Genome-fragment | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_16;integrase orf_25 | ||
| PX571963 | Wolbachia phage Tunisp_d | 30618 | 35.793 | Wolbachia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Wolbachia pipientis | Medium-quality | Genome-fragment | 54.650 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_7;integrase orf_20 |
| PX571962 | Wolbachia phage Tunisp_c | 52368 | 34.729 | Wolbachia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Wolbachia pipientis | High-quality | High-quality | 91.190 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_34 |
| PX571961 | Wolbachia phage Tunisp_b | 36624 | 34.770 | Wolbachia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Wolbachia pipientis | Medium-quality | Genome-fragment | 62.350 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_23 |
| PX571960 | Wolbachia phage Tunisp_a | 79711 | 34.665 | Wolbachia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Wolbachia pipientis | High-quality | High-quality | 93.310 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_32 |
| PX571108 | Salmonella phage SF01 | 88110 | 39.014 | Salmonella | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Felixounavirus | Felixounavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX570736 | Staphylococcus phage StaphC_127 | 41486 | 33.922 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus caprae CEMTC 1849 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | antirepressor orf_31;integrase orf_37 |