INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_031047 | Escherichia phage HY03 | 170770 | 35.302 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 ATCC 43890 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_031046 | Staphylococcus phage BP39 | 17641 | 29.018 | Staphylococcus | Group I | Rosenblumvirus | Rosenblumvirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.710 | AAI-based (high-confidence) | lytic | ||||
| NC_031045 | Salmonella phage GG32 | 157855 | 44.545 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Typhimurium | High-quality | High-quality | 99.870 | AAI-based (high-confidence) | lytic | ||||
| NC_031044 | Lactococcus phage M6165 | 22179 | 35.732 | Lactococcus | Group I | Ceduovirus | Ceduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis DGCC11032 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_031043 | Erwinia phage vB_EamM_Phobos | 229501 | 49.137 | Erwinia | Group I | Derbicusvirus | Derbicusvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora ATCC 29780 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_031042 | Salmonella phage NR01 | 111325 | 38.838 | Salmonella | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella typhimurium | High-quality | High-quality | 98.480 | AAI-based (high-confidence) | lytic | ||||
| NC_031041 | Mycobacterium phage Papez | 52501 | 63.787 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_38;immunity orf_72 | |||
| NC_031040 | Lactococcus phage 50101 | 31987 | 35.618 | Lactococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis 3107 | High-quality | High-quality | 93.750 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_3;cro orf_5;antirepressor orf_6 | |||
| NC_031039 | Bacillus phage AR9 | 251042 | 27.752 | Bacillus | Group I | Takahashivirus | Takahashivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis subsp. subtilis 168 | High-quality | High-quality | 99.770 | AAI-based (high-confidence) | lytic | ||||
| NC_031037 | Bacillus phage Nigalana | 163041 | 38.750 | Bacillus | Group I | Wphvirus | Wphvirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis subsp. kurstaki | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |