INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_031124 | Mycobacterium phage Gardann | 76012 | 58.903 | Mycobacterium | Group I | Faithunavirus | Faithunavirus | Lclasvirinae | Vilmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_39;immunity orf_41;cro orf_42 | |||
| NC_031123 | Citrobacter phage SH3 | 39444 | 50.641 | Citrobacter | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii CF3 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_031122 | Gordonia phage Eyre | 44929 | 67.455 | Gordonia | Group I | Eyrevirus | Eyrevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_32;immunity orf_33 | |||
| NC_031121 | Bacillus phage Aurora | 25905 | 30.666 | Bacillus | Group I | Claudivirus | Claudivirus | Northropvirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis subspecies kurstaki | High-quality | High-quality | 99.680 | AAI-based (high-confidence) | lytic | ||||
| NC_031120 | Erwinia phage vB_EamM_Caitlin | 241147 | 52.170 | Erwinia | Group I | Machinavirus | Machinavirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora ATCC 29780 | High-quality | High-quality | 99.340 | AAI-based (high-confidence) | lytic | ||||
| NC_031119 | Propionibacterium phage Enoki | 29347 | 54.588 | Propionibacterium | Group I | Pahexavirus | Pahexavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Propionibacterium acnes ATCC 6919 | High-quality | High-quality | 99.620 | AAI-based (high-confidence) | lytic | ||||
| NC_031118 | Gordonia phage CarolAnn | 54167 | 66.902 | Gordonia | Group I | Jujuvirus | Jujuvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_39;immunity orf_44;antirepressor orf_47 | |||
| NC_031117 | Acinetobacter phage LZ35 | 44885 | 37.948 | Acinetobacter | Group I | Obolenskvirus | Obolenskvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | High-quality | High-quality | 99.900 | AAI-based (high-confidence) | lytic | ||||
| NC_031116 | Bacillus phage Zuko | 163345 | 38.630 | Bacillus | Group I | Wphvirus | Wphvirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis subsp. kurstaki | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_031115 | Morganella phage vB_MmoP_MP2 | 39616 | 46.913 | Morganella | Group I | Minipunavirus | Minipunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Morganella sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |