INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_031230 | Gordonia phage Yvonnetastic | 98136 | 59.749 | Gordonia | Group I | Yvonnevirus | Yvonnevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_86 | |||
| NC_031229 | Gordonia phage Hotorobo | 76972 | 58.859 | Gordonia | Group I | Montyvirus | Montyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_031228 | Salmonella phage BP12C | 60606 | 56.395 | Salmonella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica Hadar | High-quality | High-quality | 94.030 | AAI-based (high-confidence) | temperate | integrase orf_14 | |||
| NC_031226 | Gordonia phage BaxterFox | 53717 | 66.543 | Gordonia | Group I | Baxterfoxvirus | Baxterfoxvirus | Nymbaxtervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_37;integrase orf_41;immunity orf_42;antirepressor orf_46 | |||
| NC_031224 | Arthrobacter phage Mudcat | 59443 | 45.104 | Arthrobacter | Group I | Mudcatvirus | Mudcatvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_031129 | Salmonella phage SJ46 | 103445 | 48.578 | Salmonella | Group I | Punavirus | Punavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Indiana J46 | High-quality | High-quality | 99.720 | AAI-based (high-confidence) | temperate | parA orf_9;antirepressor orf_20;cro orf_70;cro orf_71 | |||
| NC_031128 | Salmonella phage vB-SalM-PM10 | 158081 | 44.608 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_031127 | Erwinia phage vB_EamM_Huxley | 240761 | 51.069 | Erwinia | Group I | Machinavirus | Machinavirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora ATCC 29780 | High-quality | High-quality | 99.510 | AAI-based (high-confidence) | lytic | ||||
| NC_031126 | Erwinia phage vB_EamM_ChrisDB | 244840 | 49.414 | Erwinia | Group I | Machinavirus | Machinavirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora ATCC 29780 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_031125 | Lactobacillus phage PLE3 | 41005 | 44.931 | Lactobacillus | Group I | Pleetrevirus | Pleetrevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus casei BL23 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_25 |