INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_049924 | Stx2-converting phage Stx2a_F451 | 64900 | 49.767 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain F451 | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_1;antirepressor orf_5;antirepressor orf_6;antirepressor orf_7;cro orf_32;cro orf_33;antirepressor orf_44;antirepressor orf_61 | |||
| NC_049923 | Stx2-converting phage Stx2a_WGPS9 | 56224 | 49.945 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain 981795 | Medium-quality | Genome-fragment | 85.800 | AAI-based (high-confidence) | temperate | cro orf_13;cro orf_14;antirepressor orf_37;antirepressor orf_71 | |||
| NC_049922 | Stx converting phage vB_EcoS_ST2-8624 | 62822 | 49.607 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.910 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_29;cro orf_30;antirepressor orf_53;antirepressor orf_87 | |||
| NC_049921 | Stx1 converting phage AU6Stx1 | 57123 | 48.732 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Medium-quality | Genome-fragment | 87.140 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_21;cro orf_22;antirepressor orf_46 | |||
| NC_049920 | Stx1 converting phage AU5Stx1 | 58371 | 49.775 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Medium-quality | Genome-fragment | 88.960 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_9;cro orf_25;cro orf_26;antirepressor orf_36;antirepressor orf_50 | |||
| NC_049919 | Escherichia phage SH2026Stx1 | 61564 | 49.391 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 SH2026 | High-quality | High-quality | 93.800 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_50 | |||
| NC_049918 | Escherichia phage ArgO145 | 62020 | 50.002 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O145:H- strain FB5 | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_30;cro orf_33;cro orf_34;antirepressor orf_50 | |||
| NC_049917 | Escherichia phage Lyz12581Vzw | 62668 | 50.137 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O145 | High-quality | High-quality | 94.970 | AAI-based (high-confidence) | temperate | antirepressor orf_12;antirepressor orf_15;antirepressor orf_36;antirepressor orf_53;antirepressor orf_54;antirepressor orf_55;integrase orf_61 | |||
| NC_049900 | Listeria phage LP-HM00113468 | 40298 | 35.488 | Listeria | Group I | Slepowronvirus | Slepowronvirus | Trabyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes HM00113468 | High-quality | High-quality | 95.990 | AAI-based (high-confidence) | temperate | cro orf_38;integrase orf_41 | |||
| NC_049857 | Lactococcus phage P1048 | 123023 | 32.967 | Lactococcus | Group I | Audreyjarvisvirus | Audreyjarvisvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 97.510 | AAI-based (high-confidence) | temperate | integrase orf_1;integrase orf_143 |