INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PX682279 | Aeromonas phage AG89P4 | 42874 | 52.398 | Aeromonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Aeromonas dhakensis A24.1 | Medium-quality | Genome-fragment | 81.630 | AAI-based (high-confidence) | Phayathaivirus | Phayathaivirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PX682278 | Edwardsiella phage FAG29P1 | 43999 | 47.137 | Edwardsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Edwardsiella tarda E24.1 | High-quality | High-quality | 97.200 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PX682277 | Edwardsiella phage CT68P1 | 39142 | 50.544 | Edwardsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Edwardsiella ictaluri E1 | High-quality | High-quality | 97.910 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX682272 | Nitrosomonas phage vB_NeuP-Nir1 | 41212 | 44.941 | Nitrosomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Nitrosomonas europaea DSM 28437 (=Nm50) | Complete | High-quality | 100.000 | DTR (high-confidence) | Catalonvirus | Catalonvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX680748 | Stenotrophomonas phage vB_Sma_QH167 | 75874 | 54.805 | Stenotrophomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Stenotrophomonas maltophilia 902 | High-quality | High-quality | 99.930 | AAI-based (high-confidence) | Pokkenvirus | Pokkenvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX680747 | Stenotrophomonas phage vB_Sma_QH17 | 42418 | 58.320 | Stenotrophomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Stenotrophomonas maltophilia 935 | High-quality | High-quality | 98.660 | AAI-based (high-confidence) | Maltophvirus | Maltophvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX680579 | Acinetobacter phage ACam1 | 43055 | 48.050 | Acinetobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Acinetobacter baumannii 17978 | High-quality | High-quality | 99.570 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX677422 | Pseudomonas phage Baskent_P7 | 47697 | 59.677 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_62 |
| PX674298 | Bacillus phage MBMR7 | 152946 | 41.386 | Bacillus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Bacillus altitudinis | High-quality | High-quality | 99.130 | AAI-based (high-confidence) | Agatevirus | Agatevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX674087 | Klebsiella phage PK38 | 43481 | 53.948 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella pneumoniae KP7 | Complete | High-quality | 100.000 | DTR (high-confidence) | Drulisvirus | Drulisvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |