Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PX682307Xanthomonas phage vB_Xoo_CZ24616851.997XanthomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Xanthomonas oryzae pv. oryzaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) XipdecavirusXipdecavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX682306Xanthomonas phage vB_Xoo_CZ14614252.005XanthomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Xanthomonas oryzae pv. oryzaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) XipdecavirusXipdecavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX682305Xanthomonas phage vB_Xoo_AQ14244852.344XanthomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Xanthomonas oryzae pv. oryzaeHigh-qualityHigh-quality95.970AAI-based (high-confidence) XipdecavirusXipdecavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX682304Xanthomonas phage vB_Xoo_QZ5324473352.196XanthomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Xanthomonas oryzae pv. oryzaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) XipdecavirusXipdecavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX682303Xanthomonas phage vB_Xoo_QZ1434581851.934XanthomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Xanthomonas oryzae pv. oryzaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) XipdecavirusXipdecavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX682302Xanthomonas phage vB_Xoo_NBW4486252.318XanthomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Xanthomonas oryzae pv. oryzaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) XipdecavirusXipdecavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX682301Xanthomonas phage vB_Xoo_JL1LN4250651.884XanthomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Xanthomonas oryzae pv. oryzae LN4High-qualityHigh-quality96.120AAI-based (high-confidence) XipdecavirusXipdecavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX682300Xanthomonas phage vB_Xoo_JH14381352.343XanthomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Xanthomonas oryzae pv. oryzaeHigh-qualityHigh-quality99.060AAI-based (high-confidence) XipdecavirusXipdecavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX682299Xanthomonas phage vB_Xoo_GDJ34335351.727XanthomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Xanthomonas oryzae pv. oryzaeHigh-qualityHigh-quality98.040AAI-based (high-confidence) XipdecavirusXipdecavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX682280Aeromonas phage DT65P15254952.340AeromonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Aeromonas dhakensis A4.4THigh-qualityHigh-quality99.830AAI-based (high-confidence) PhayathaivirusPhayathaivirus pAh62TGThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
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