INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_054944 | Yersinia phage PYPS2T | 169604 | 35.404 | Yersinia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pseudotuberculosis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_054943 | Yersinia phage fPS-2 | 169060 | 35.347 | Yersinia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_054942 | Shigella phage SH7 | 164870 | 35.446 | Shigella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella sp. | High-quality | High-quality | 98.020 | AAI-based (high-confidence) | lytic | ||||
| NC_054941 | Shigella phage Sf23 | 167678 | 35.382 | Shigella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri, Shigella boydii, Shigella dysenteriae | High-quality | High-quality | 99.690 | AAI-based (high-confidence) | lytic | ||||
| NC_054940 | Shigella phage JK45 | 170740 | 37.639 | Shigella | Group I | Mosigvirus | Mosigvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli DH5alpha | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_054939 | Shigella phage CM8 | 167247 | 35.280 | Shigella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli BL21 | High-quality | High-quality | 99.430 | AAI-based (high-confidence) | lytic | ||||
| NC_054938 | Serratia phage PhiZZ30 | 167484 | 35.345 | Serratia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia sp. ATCC 39006 | High-quality | High-quality | 99.620 | AAI-based (high-confidence) | lytic | ||||
| NC_054937 | Salmonella phage pSe_SNUABM_01 | 172360 | 35.360 | Salmonella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis SE54 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_054936 | Salmonella phage SG1 | 169805 | 35.276 | Salmonella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Gallinarum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_054935 | Escherichia phage YUEEL01 | 168266 | 35.360 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli ART2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |