INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PZ285943 | Pseudomonas phage UCS18C4 | 84744 | 54.666 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas aeruginosa (UCS18) | High-quality | High-quality | 96.820 | AAI-based (high-confidence) | Nankokuvirus | Nankokuvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ285941 | Pseudomonas phage UCS18C3_1 | 12737 | 51.606 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas aeruginosa (UCS18) | Low-quality | Genome-fragment | 28.090 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PZ285940 | Enterococcus phage UCS17X2C2 | 57033 | 40.042 | Enterococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterococcus spp (UCS17.2) | High-quality | High-quality | 99.550 | AAI-based (high-confidence) | Saphexavirus | Saphexavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ285939 | Enterococcus phage UCS17X2C1 | 57214 | 39.926 | Enterococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterococcus spp (UCS17.2) | High-quality | High-quality | 99.850 | AAI-based (high-confidence) | Saphexavirus | Saphexavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ285938 | Enterococcus phage MYC30C1_2 | 41544 | 35.295 | Enterococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterococcus faecium (MYC30) | High-quality | High-quality | 98.340 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_26;antirepressor orf_31 |
| PZ285937 | Enterococcus phage MYC30C1_1 | 46076 | 34.860 | Enterococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterococcus faecium (MYC30) | High-quality | High-quality | 93.240 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ285936 | Klebsiella phage MYC16C2 | 59473 | 45.153 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella aerogenes (MYC16) | Medium-quality | Genome-fragment | 52.530 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PZ285935 | Klebsiella phage MYC16C1 | 43494 | 56.665 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella aerogenes (MYC16) | High-quality | High-quality | 94.140 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ285934 | Pseudomonas phage MGB1X4C4 | 19227 | 55.120 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas aeruginosa (MGB1X4C4) | Low-quality | Genome-fragment | 29.110 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PZ285933 | Pseudomonas phage CSM01C1 | 10977 | 45.167 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas aeruginosa (CSM01) | Low-quality | Genome-fragment | 21.890 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic |