INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PX789363 | Vibrio phage PHZU0002 | 47587 | 43.220 | Vibrio | Group I | Zobellviridae | Unclassified | Unclassified | Zobellviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio harveyi | High-quality | High-quality | 98.300 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX789331 | Pseudoxanthomonas phage PT847 | 5653 | 59.508 | Pseudoxanthomonas | Group II | Inoviridae | Unclassified | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Pseudoxanthomonas taiwanensis S2247 | Medium-quality | Genome-fragment | 78.250 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| PX789330 | Pseudoxanthomonas phage PT456 | 44718 | 63.476 | Pseudoxanthomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoxanthomonas taiwanensis E2456 | High-quality | High-quality | 92.500 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PX789329 | Pseudoxanthomonas phage PT816 | 56972 | 56.472 | Pseudoxanthomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoxanthomonas taiwanensis T216 | Medium-quality | Genome-fragment | 89.980 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX789328 | Pseudoxanthomonas phage PT226 | 64720 | 64.858 | Pseudoxanthomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoxanthomonas taiwanensis CB-226 | High-quality | High-quality | 95.310 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX789327 | Pseudoxanthomonas phage PS525 | 60169 | 69.360 | Pseudoxanthomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoxanthomonas suwonensis E24525 | High-quality | High-quality | 99.520 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_74 |
| PX789326 | Pseudoxanthomonas phage PS519 | 60086 | 69.324 | Pseudoxanthomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoxanthomonas suwonensis E24519 | High-quality | High-quality | 98.630 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_73 |
| PX789325 | Pseudoxanthomonas phage PS211 | 60834 | 69.469 | Pseudoxanthomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoxanthomonas suwonensis C211 | High-quality | High-quality | 99.840 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX789324 | Pseudomonas phage MC11 | 58806 | 64.201 | Pseudomonas | Group I | Yuavirus | Yuavirus | Rabinowitzvirinae | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 95.920 | AAI-based (high-confidence) | Yuavirus | Yuavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX787854 | Enterobacter phage vB_EclP_B1 | 40163 | 52.339 | Enterobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterobacter cloacae ECL51159 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kayfunavirus | Kayfunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |