INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OL539439 | Serratia phage vB_SmaS_Carrot | 41293 | 45.739 | Serratia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia marcescens | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | Bonzeevirus | Bonzeevirus bigdog | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OL539438 | Serratia phage vB_SmaS_Swain | 41292 | 45.733 | Serratia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia marcescens | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | Bonzeevirus | Bonzeevirus bigdog | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OL519844 | Pseudomonas phage vB_PaeS_TUMS_P81 | 73167 | 54.955 | Pseudomonas | Group I | Litunavirus | Litunavirus | Migulavirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa ATCC 27853 | Complete | High-quality | 100.000 | DTR (high-confidence) | Litunavirus | Litunavirus P121 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OL519843 | Salmonella phage vB_SenS_TUMS_E19 | 42813 | 49.751 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis derived from ATCC 13076 | High-quality | High-quality | 99.880 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus TUMSE19 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OL519842 | Pseudomonas phage vB_PaeS_TUMS_P6 | 73885 | 53.487 | Pseudomonas | Group I | Luzseptimavirus | Luzseptimavirus | Migulavirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa ATCC 27853 | Complete | High-quality | 100.000 | DTR (high-confidence) | Luzseptimavirus | Luzseptimavirus KPP21 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OL512807 | Vibrio phage V5 | 6658 | 43.677 | Vibrio | Group II | Villovirus | Villovirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio parahaemolyticus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OL512804 | Hafnia phage Pocitis76 | 44148 | 46.290 | Hafnia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Hafnia sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_26 |
| OL505085 | Enterococcus phage EFap05-1 | 56564 | 39.987 | Enterococcus | Group I | Saphexavirus | Saphexavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 98.720 | AAI-based (high-confidence) | Saphexavirus | Saphexavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OL505084 | Enterococcus phage EFap02 | 39766 | 34.874 | Enterococcus | Group I | Efquatrovirus | Efquatrovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 97.590 | AAI-based (high-confidence) | Efquatrovirus | Efquatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OL505078 | Escherichia phage BI-EHEC | 151425 | 39.004 | Escherichia | Group I | Phapecoctavirus | Phapecoctavirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterohemorrhagic Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Phapecoctavirus | Phapecoctavirus Mt1B1P17 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |