Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PX866607Shewanella phage Nesoi15704234.812ShewanellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Shewanella oneidensis MR-1High-qualityHigh-quality98.220AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PX866606Klebsiella phage Crius5219447.879KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella aerogenes NCDC 819-56High-qualityHigh-quality100.000AAI-based (high-confidence) WebervirusWebervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX866605Cellulosimicrobium phage Basalisk5705563.526CellulosimicrobiumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Cellulosimicrobium sp. F32-44Medium-qualityGenome-fragment76.290AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PX866604Proteus phage P105850146.832ProteusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Proteus mirabilis B446High-qualityHigh-quality98.200AAI-based (high-confidence) LavrentievavirusLavrentievavirus pPM01Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX866603Priestia phage Wyrm8044935.476PriestiaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Priestia megaterium KMHigh-qualityHigh-quality99.470AAI-based (high-confidence) SlashvirusSlashvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_93
PX866602Cellulosimicrobium phage Cyclops5998667.966CellulosimicrobiumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Cellulosimicrobium sp. F32-44High-qualityHigh-quality95.310AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PX866601Bacillus phage Nierus15487241.730BacillusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Priestia megaterium KMHigh-qualityHigh-quality98.060AAI-based (high-confidence) JeonjuvirusJeonjuvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX866600Bacillus phage Wyvern14325937.080BacillusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Priestia megaterium KMHigh-qualityHigh-quality100.000AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PX866599Priestia phage Salamander3921540.166PriestiaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Priestia megaterium KMHigh-qualityHigh-quality98.280AAI-based (high-confidence) PagevirusPagevirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PX866598Shewanella phage Hypnos15970935.145ShewanellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Shewanella oneidensis MR-1High-qualityHigh-quality99.890AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
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