INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PX867096 | Enterococcus phage Abitsa | 41581 | 34.706 | Enterococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterococcus faecalis ATCC 19433 (Ef1) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Efquatrovirus | Efquatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX867095 | Enterococcus phage vB_Ef5_HMKU_24 | 40270 | 34.889 | Enterococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterococcus faecalis | Complete | High-quality | 100.000 | DTR (high-confidence) | Efquatrovirus | Efquatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX867094 | Enterococcus phage vB_Ef3_HMKU_24 | 58566 | 39.455 | Enterococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterococcus faecalis | Complete | High-quality | 100.000 | DTR (high-confidence) | Saphexavirus | Saphexavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX867093 | Enterococcus phage vB_Ef32_HMKU_24 | 58558 | 39.549 | Enterococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterococcus faecalis | Complete | High-quality | 100.000 | DTR (high-confidence) | Saphexavirus | Saphexavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX866998 | Pseudomonas phage VNP12.1 | 42831 | 62.310 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas aeruginosa | High-quality | High-quality | 99.450 | AAI-based (high-confidence) | Phikmvvirus | Phikmvvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX866612 | Cellulosimicrobium phage Gorgon | 61054 | 72.868 | Cellulosimicrobium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Cellulosimicrobium sp. F32-44 | Medium-quality | Genome-fragment | 82.860 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX866611 | Cellulosimicrobium phage Cerberus | 59992 | 68.021 | Cellulosimicrobium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Cellulosimicrobium sp. F32-44 | High-quality | High-quality | 95.370 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX866610 | Proteus phage P15-podo | 41568 | 39.444 | Proteus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Proteus mirabilis ATCC 29906 | High-quality | High-quality | 99.370 | AAI-based (high-confidence) | Panjvirus | Panjvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX866609 | Shewanella phage Persephone | 157309 | 34.697 | Shewanella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Shewanella oneidensis MR-1 | High-quality | High-quality | 98.430 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX866608 | Cellulosimicrobium phage Hyppocamp | 62509 | 62.097 | Cellulosimicrobium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Cellulosimicrobium sp. F32-44 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |