INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ON454249 | Enterobacter phage vB_EclM-UFV01 | 174517 | 39.675 | Enterobacter | Group I | Karamvirus | Karamvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter cloacae ATCC 13047 | Complete | High-quality | 100.000 | DTR (high-confidence) | Karamvirus | Karamvirus UFV01 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON454038 | Salmonella phage PST-H1 | 42036 | 49.943 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp. | High-quality | High-quality | 98.130 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus CTH7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON453905 | Flavonifractor phage Cormatin | 35440 | 61.862 | Flavonifractor | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Flavonifractor plautii | High-quality | High-quality | 95.040 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_8 |
| ON453904 | Flavonifractor phage Chenonceau | 42124 | 51.116 | Flavonifractor | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Flavonifractor plautii | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_2;cro orf_48 |
| ON453903 | Flavonifractor phage Castelnaud | 37125 | 58.586 | Flavonifractor | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Flavonifractor plautii | Medium-quality | Genome-fragment | 88.460 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | cro orf_46;integrase orf_50 |
| ON453902 | Clostridium phage Villandry | 37533 | 53.153 | Clostridium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterocloster clostridioformis | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ON453901 | Clostridium phage Saumur | 47242 | 47.665 | Clostridium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterocloster clostridioformis | High-quality | High-quality | 98.560 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ON453900 | Clostridium phage Maintenon | 57045 | 37.400 | Clostridium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | [Clostridium] innocuum | High-quality | High-quality | 98.540 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;antirepressor orf_5;integrase orf_81 |
| ON453899 | Clostridium phage Amboise | 77323 | 35.393 | Clostridium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | [Clostridium] innocuum | Medium-quality | Genome-fragment | 58.180 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ON453898 | Blautia phage Montmirail | 46066 | 42.328 | Blautia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Blautia coccoides | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |