INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ON922918 | Escherichia phage vB_EcoM_PD328 | 59156 | 43.845 | Escherichia | Group I | Nonagvirus | Nonagvirus | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | Nonagvirus | Nonagvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON922917 | Riemerella phage vB_RanS_PT33 | 43763 | 34.810 | Riemerella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Riemerella anatipestifer | High-quality | High-quality | 94.410 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_45;antirepressor orf_70 |
| ON920540 | Actinomyces phage LC001 | 26219 | 65.758 | Actinomyces | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Schalia odontolyticus XH001 | Medium-quality | Genome-fragment | 87.560 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ON911718 | Staphylococcus phage SAP13_TA-2022 | 43478 | 34.601 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus RN4220 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_4;cro orf_5;antirepressor orf_6;integrase orf_34 |
| ON911717 | Staphylococcus phage SAP8_Andrews | 42981 | 34.103 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus RN4220 | High-quality | High-quality | 99.750 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_5;antirepressor orf_6;integrase orf_30 |
| ON911716 | Staphylococcus phage SAP3_TA-2022 | 43586 | 34.591 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus RN4220 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_8;integrase orf_36 |
| ON911715 | Staphylococcus phage SAP-2 | 43863 | 34.020 | Staphylococcus | Group I | Rosenblumvirus | Rosenblumvirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus RN4220 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_4;cro orf_5;antirepressor orf_6;integrase orf_36 |
| ON911714 | Staphylococcus phage SAP1_TA-2022 | 43962 | 34.250 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus RN4220 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_4;cro orf_5;antirepressor orf_8;integrase orf_38 |
| ON911540 | Xanthomonas phage vB_Xar_IVIA-DoCa3 | 58107 | 58.544 | Xanthomonas | Group I | Nipunavirus | Nipunavirus | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas arboricola pv. juglandis IVIA 1317-1a | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nipunavirus | Nipunavirus Doca3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON911539 | Xanthomonas phage vB_Xar_IVIA-DoCa2 | 42857 | 62.678 | Xanthomonas | Group I | Pradovirus | Pradovirus | Gujervirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas arboricola pv. juglandis IVIA 1317-1a | High-quality | High-quality | 96.440 | AAI-based (high-confidence) | Pradovirus | Pradovirus IVIADoCa2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |