INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OP328422	Staphylococcus phage phiSa2wa-st1633	49642	33.369	Staphylococcus	Group I	Triavirus	Triavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus subsp. aureus strain 20065 genotype ST1633-MRSA-V	Complete	High-quality	100.000	DTR (high-confidence)	Triavirus	Triavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_7;antirepressor orf_9;integrase orf_34
OP328421	Staphylococcus phage phiSa2wa-st1420	17124	32.206	Staphylococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus subsp. aureus strain 20015 genotype ST1420-MRSA	Low-quality	Genome-fragment	37.420	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_1
OP328420	Staphylococcus phage phiSa2wa-st923	45914	33.123	Staphylococcus	Group I	Triavirus	Triavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus subsp. aureus strain 18116 genotype ST923-MRSA-IV	Complete	High-quality	100.000	DTR (high-confidence)	Triavirus	Triavirus P240	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;integrase orf_31
OP323077	Lactococcus phage D6890	34452	35.934	Lactococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus cremoris DGCC6073	High-quality	High-quality	95.270	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	cro orf_28;antirepressor orf_31
OP323076	Lactococcus phage D4840	37438	35.851	Lactococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus cremoris DGCC6073	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	cro orf_29;antirepressor orf_31;antirepressor orf_33
OP323075	Lactococcus phage D4351	33227	36.022	Lactococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis DGCC7127	High-quality	High-quality	92.320	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	antirepressor orf_25
OP323074	Lactococcus phage D4044	38040	35.762	Lactococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis DGCC7204	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	antirepressor orf_31
OP323073	Lactococcus phage D3906	36041	35.646	Lactococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis DGCC7158	High-quality	High-quality	98.560	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	cro orf_28;antirepressor orf_31
OP323072	Lactococcus phage D2950	34983	35.895	Lactococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis DGCC7180	High-quality	High-quality	94.100	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	cro orf_27;antirepressor orf_29;antirepressor orf_30;antirepressor orf_31
OP323071	Lactococcus phage D2544	36290	35.762	Lactococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis DGCC7180	High-quality	High-quality	99.710	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	cro orf_30;antirepressor orf_34