INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OP341627 | Geobacillus phage vB_GthS_PK3.6 | 38405 | 43.682 | Geobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Geobacillus thermodenitrificans | High-quality | High-quality | 93.980 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | cro orf_27 |
| OP341626 | Geobacillus phage vB_GthS_PK3.5 | 38788 | 43.501 | Geobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Geobacillus thermodenitrificans | High-quality | High-quality | 94.920 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | cro orf_27;antirepressor orf_39 |
| OP341625 | Geobacillus phage vB_GthS_PK2.1 | 46106 | 45.948 | Geobacillus | Group I | Saundersvirus | Saundersvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Geobacillus thermodenitrificans | High-quality | High-quality | 96.330 | AAI-based (high-confidence) | Saundersvirus | Saundersvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP341624 | Geobacillus phage vB_GthS_NIIg9.7 | 39016 | 43.710 | Geobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Geobacillus thermodenitrificans | High-quality | High-quality | 95.480 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | cro orf_25;antirepressor orf_40 |
| OP341623 | Parageobacillus phage vB_PtoS_NIIg3.2 | 38970 | 42.199 | Parageobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Parageobacillus toebii | High-quality | High-quality | 95.940 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_31 |
| OP331230 | Escherichia phage 04922B | 39427 | 48.609 | Escherichia | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.840 | AAI-based (high-confidence) | Teseptimavirus | Teseptimavirus tv04922B | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP331229 | Vibrio phage 033B | 55858 | 51.257 | Vibrio | Group I | Queuovirinae | Unclassified | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus | High-quality | High-quality | 99.170 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP331213 | Klebsiella phage pKp20 | 165762 | 39.476 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. H122500354 | High-quality | High-quality | 97.980 | AAI-based (high-confidence) | Jiaodavirus | Jiaodavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP329100 | Pseudomonas phage LUZ100 | 37343 | 60.558 | Pseudomonas | Group I | Luzcentumvirus | Luzcentumvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PaLo41 | Complete | High-quality | 100.000 | DTR (high-confidence) | Luzcentumvirus | Luzcentumvirus LUZ100 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_5 |
| OP328423 | Staphylococcus phage phiSa2wa-st1930 | 44629 | 33.386 | Staphylococcus | Group I | Bronfenbrennervirinae | Unclassified | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus strain 15744 genotype ST1930-MRSA-IV | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;integrase orf_31 |