INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OP596613	Bradyrhizobium phage ppBeUSDA76-1	43058	64.225	Bradyrhizobium	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bradyrhizobium elkanii USDA 76	Medium-quality	Genome-fragment	78.790	AAI-based (medium-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_6
OP596612	Bradyrhizobium phage ppBdUSDA122-1	45606	64.601	Bradyrhizobium	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bradyrhizobium diazoefficiens USDA 122	Medium-quality	Genome-fragment	59.290	HMM-based (lower-bound)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_57;integrase orf_61
OP595602	Vibrio phage 33Fb.4	77632	48.895	Vibrio	Group I	Mardecavirus	Mardecavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Mardecavirus	Mardecavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OP595601	Vibrio phage 31Fb.4	77620	48.882	Vibrio	Group I	Mardecavirus	Mardecavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus	Complete	High-quality	100.000	DTR (high-confidence)	Mardecavirus	Mardecavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OP595146	Escherichia phage vB_EcoM_DE17	86724	38.897	Escherichia	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	98.500	AAI-based (high-confidence)	Felixounavirus	Felixounavirus DE17	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP595145	Escherichia phage vB_EcoM_DE16	151363	39.051	Escherichia	Group I	Phapecoctavirus	Phapecoctavirus	Stephanstirmvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	99.870	AAI-based (high-confidence)	Phapecoctavirus	Phapecoctavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP595144	Escherichia phage vB_EcoM_DE15	53998	44.052	Escherichia	Group I	Carltongylesvirus	Carltongylesvirus	Cleopatravirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Carltongylesvirus	Carltongylesvirus DE15	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP594723	Salmonella phage PS3-1	107110	38.853	Salmonella	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium	High-quality	High-quality	94.780	AAI-based (high-confidence)	Tequintavirus	Tequintavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OP594307	Staphylococcus phage Henu2	43513	35.088	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phietavirus	Phietavirus Henu2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_15;cro orf_18;antirepressor orf_20;antirepressor orf_23;integrase orf_42
OP590147	Leptolyngbya phage LPP-2, strain SPI	42319	46.511	Leptolyngbya	Group I	Wumptrevirus	Wumptrevirus	Unclassified	Saffermanviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Leptolyngbya boryana IU 594	Complete	High-quality	100.000	DTR (high-confidence)	Wumptrevirus	Wumptrevirus LPP2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic