INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

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Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PZ025973	Staphylococcus phage SA-Mt1	17869	28.899	Staphylococcus	Group I	Rosenblumvirus	Rosenblumvirus	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Rosenblumvirus	Rosenblumvirus GRCS	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ022450	Klebsiella phage EGYARMY-RLEUH01	174591	41.860	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella pneumoniae	High-quality	High-quality	98.000	AAI-based (high-confidence)	Slopekvirus	Slopekvirus matisse	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ020385	Mycobacterium phage Goose1X	45626	63.904	Mycobacterium	Group I	Veracruzvirus	Veracruzvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	90.850	AAI-based (high-confidence)	Veracruzvirus	Veracruzvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_30;immunity orf_66
PZ020384	Mycobacterium phage Goose1D	46510	63.808	Mycobacterium	Group I	Veracruzvirus	Veracruzvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	92.720	AAI-based (high-confidence)	Veracruzvirus	Veracruzvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_61
PZ020098	Salmonella phage S159	112263	40.003	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella sp.	High-quality	High-quality	99.250	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PZ020097	Salmonella phage S158	112237	40.075	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella sp.	High-quality	High-quality	99.220	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PZ019817	Staphylococcus phage vB_SauP-INT105	17450	29.140	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus sp.	High-quality	High-quality	98.250	AAI-based (high-confidence)	Rosenblumvirus	Rosenblumvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ019803	Xanthomonas phage vXeeB-W18B	47424	62.936	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas euvesicatoria pv. euvesicatoria	High-quality	High-quality	100.000	AAI-based (high-confidence)	Beograduvirus	Beograduvirus BsXeu	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ019802	Xanthomonas phage vXeeB-P14B	47410	62.921	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas euvesicatoria pv. euvesicatoria	High-quality	High-quality	100.000	AAI-based (high-confidence)	Beograduvirus	Beograduvirus BsXeu	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_4
PZ019801	Xanthomonas phage vXeeB-P10B	47421	62.917	Xanthomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Xanthomonas euvesicatoria pv. euvesicatoria	High-quality	High-quality	100.000	AAI-based (high-confidence)	Beograduvirus	Beograduvirus BsXeu	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic