INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OQ547903 | Acinetobacter phage XC1 | 45324 | 37.422 | Acinetobacter | Group I | Nosocomialisvirus | Nosocomialisvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter nosocomialis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nosocomialisvirus | Nosocomialisvirus XC1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ540978 | Escherichia phage pEC-N1203-2Af.1 | 77334 | 42.185 | Escherichia | Group I | Kuravirus | Kuravirus | Gordonclarkvirinae | Mtkvariviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli N1203-2Af | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kuravirus | Kuravirus pECN12032Af1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ540924 | Nostoc phage NMeng1 | 44509 | 51.160 | Nostoc | Group I | Mengvirus | Mengvirus | Dunnvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Nostoc sp. | High-quality | High-quality | 97.390 | AAI-based (high-confidence) | Mengvirus | Mengvirus NMeng1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ540923 | Microcystis phage MJing1 | 42068 | 70.914 | Microcystis | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microcystis sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_7 |
| OQ515481 | Campylobacter phage vB_Cj_QDYZ | 130627 | 26.214 | Campylobacter | Group I | Fletchervirus | Fletchervirus | Unclassified | Connertonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Campylobacter jejuni 2206 | High-quality | High-quality | 98.490 | AAI-based (high-confidence) | Fletchervirus | Fletchervirus QDYZ | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ508958 | Pseudoalteromonas phage vB_PtuP_Slicky01 | 65166 | 39.711 | Pseudoalteromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoaltermonas tunicata SMS2 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OQ508957 | Alishewanella phage vB_AspM_Slickus01 | 141644 | 36.710 | Alishewanella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Alishewanella sp. SMS8 | High-quality | High-quality | 90.070 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_62 |
| OQ508956 | Alishewanella phage vB_AspM_Slicko01 | 141431 | 36.669 | Alishewanella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Alishewanella sp. SMS8 | Medium-quality | Genome-fragment | 89.930 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OQ507919 | Escherichia phage vB_Ec_Tarrare | 40953 | 47.347 | Escherichia | Group I | Rindgevirus | Rindgevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli HB101 K12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rindgevirus | Rindgevirus tarrare | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ507916 | Salmonella phage ZCSE7 | 44336 | 49.504 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |