Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
OQ658369Pseudomonas phage sp.3958762.753PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa PACLHigh-qualityHigh-quality97.530AAI-based (high-confidence) TorontovirusTorontovirus H71Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_43
OQ658368Pseudomonas phage sp.4092661.990PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa PACLHigh-qualityHigh-quality98.090AAI-based (high-confidence) CitexvirusCitexvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_5
OQ658367Pseudomonas phage sp.4307462.079PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa PACLHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_2;cro orf_14
OQ658366Pseudomonas phage sp.1847565.294PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa PACLLow-qualityGenome-fragment42.400AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
OQ658365Pseudomonas phage sp.6197562.520PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa PACLHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_73
OQ658364Pseudomonas phage sp.5955661.663PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa PACLMedium-qualityGenome-fragment71.320HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_11
OQ658363Pseudomonas phage sp.1994660.152PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa PACLHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
OQ653963Enterococcus phage PEF115016637.068EnterococcusGroup I SchiekvirusSchiekvirusBrockvirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalisHigh-qualityHigh-quality98.470AAI-based (high-confidence) SchiekvirusSchiekvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
OQ652145Pseudomonas phage nanoLUZ19v4344662.091PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) PhikmvvirusPhikmvvirus LUZ19Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
OQ646790Pseudomonas phage PA_LZ035736763.353PseudomonasGroup I AbidjanvirusAbidjanvirusBradleyvirinaeMesyanzhinovviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosa PA14High-qualityHigh-quality93.930AAI-based (high-confidence) AbidjanvirusAbidjanvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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