Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PZ086329Enterobacter phage vB_Ecl506504-EEn3117203539.544EnterobacterGroup I KaramvirusKaramvirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterobacter cloacaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) KaramvirusKaramvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ086328Enterobacter phage vB_Ecl420170-EEn2617567539.639EnterobacterGroup I KaramvirusKaramvirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterobacter cloacaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) KaramvirusKaramvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ086327Enterobacter phage vB_Ecl420170-EEn2517190039.700EnterobacterGroup I KaramvirusKaramvirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterobacter cloacaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) KaramvirusKaramvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ086326Enterobacter phage vB_Ecl466880-EEn217236639.752EnterobacterGroup I KaramvirusKaramvirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterobacter cloacaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) KaramvirusKaramvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ069137Salmonella phage SZ-294771745.688SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella sp.High-qualityHigh-quality100.000AAI-based (high-confidence) SkatevirusSkatevirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PZ069001Pectobacterium phage vB_Pc-9E14803546.269PectobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pectobacterium carotovorum 270High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PZ069000Pectobacterium phage vB_Pc-517958344.790PectobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pectobacterium carotovorum 3981High-qualityHigh-quality100.000AAI-based (high-confidence) PseudotevenvirusPseudotevenvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ068999Pectobacterium phage vB_Pc-44951548.733PectobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pectobacterium carotovorum 3981High-qualityHigh-quality98.280AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PZ055576Pseudomonas phage vB_PsP_Zapad4043357.527PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas syringae BIM B-268High-qualityHigh-quality99.410AAI-based (high-confidence) GhunavirusGhunavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ055575Pseudomonas phage vB_PsP_Vostok4020357.376PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas syringae BIM B-268High-qualityHigh-quality98.840AAI-based (high-confidence) GhunavirusGhunavirus KNPCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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