Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PZ095245Mycobacterium phage Shep4679763.822MycobacteriumGroup I VeracruzvirusVeracruzvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality93.310AAI-based (high-confidence) VeracruzvirusVeracruzvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_30;immunity orf_66
PZ095064Shigella phage Junood PK94466645.435ShigellaGroup I VectrevirusVectrevirusMolineuxvirinaeAutosignataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Shigella flexneriCompleteHigh-quality100.000DTR (high-confidence) VectrevirusVectrevirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ095063Shigella phage Junood PK85131043.958ShigellaGroup I VectrevirusVectrevirusMolineuxvirinaeAutosignataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Shigella flexneriCompleteHigh-quality100.000DTR (high-confidence) HanrivervirusHanrivervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ095062Shigella phage Junood PK710827739.037ShigellaGroup I TequintavirusTequintavirusMarkadamsvirinaeDemerecviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Shigella flexneriHigh-qualityHigh-quality95.780AAI-based (high-confidence) TequintavirusTequintavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PZ095061Shigella phage Junood PK65957556.376ShigellaGroup I CasjensviridaeUnclassifiedUnclassifiedCasjensviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Shigella flexneriHigh-qualityHigh-quality92.300AAI-based (high-confidence) ChivirusChivirus SeWh1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ092063Enterobacter phage vB_AHBD255059249.093EnterobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Enterobacter cloacae DXskHigh-qualityHigh-quality100.000AAI-based (high-confidence) HenuseptimavirusHenuseptimavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ091942Escherichia phage vB_EcoP_P614257793342.565EscherichiaGroup I SuseptimavirusSuseptimavirusGordonclarkvirinaeMtkvariviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliCompleteHigh-quality100.000DTR (high-confidence) SuseptimavirusSuseptimavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PZ091928Klebsiella phage KPTJT114102851.908KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniaeCompleteHigh-quality100.000DTR (high-confidence) PrzondovirusPrzondovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ086331Enterobacter phage vB_Ecl476498-EEn817191239.824EnterobacterGroup I KaramvirusKaramvirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterobacter cloacaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) KaramvirusKaramvirus id4496Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ086330Enterobacter phage vB_Ecl32345-EEn3517369739.755EnterobacterGroup I KaramvirusKaramvirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterobacter cloacaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) KaramvirusKaramvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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