INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OQ828659	Staphylococcus phage SapYZUs7	43682	33.181	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus aureus s7	High-quality	High-quality	100.000	AAI-based (high-confidence)	Biseptimavirus	Biseptimavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_6;antirepressor orf_10;integrase orf_36
OQ828465	Pseudomonas phage PA_ZH1	278577	36.885	Pseudomonas	Group I	Phikzvirus	Phikzvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomomas aeruginosa PAO1	High-quality	High-quality	99.370	AAI-based (high-confidence)	Phikzvirus	Phikzvirus phiKZ	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ828464	Pseudomonas phage PA_CQ9	45672	52.590	Pseudomonas	Group I	Bruynoghevirus	Bruynoghevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomomas aeruginosa PAO1	Complete	High-quality	100.000	DTR (high-confidence)	Bruynoghevirus	Bruynoghevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ828463	Pseudomonas phage PA_GL1	65283	55.587	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomomas aeruginosa PAO1	High-quality	High-quality	98.830	AAI-based (high-confidence)	Pbunavirus	Pbunavirus USP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ828462	Acinetobacter phage AB_SZL4	44398	37.914	Acinetobacter	Group I	Obolenskvirus	Obolenskvirus	Unclassified	Hirszfeldviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii	High-quality	High-quality	98.760	AAI-based (high-confidence)	Burnvirus	Burnvirus Aba01	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OQ828306	Yersinia phage vB_YpEc11	40118	45.930	Yersinia	Group I	Helsettvirus	Helsettvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pestis EV76-CN	Complete	High-quality	100.000	DTR (high-confidence)	Helsettvirus	Helsettvirus YpEc11	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ828305	Yersinia phage vB_YpYeO9	38761	48.742	Yersinia	Group I	Teseptimavirus	Teseptimavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pestis EV76-CN	Complete	High-quality	100.000	DTR (high-confidence)	Teseptimavirus	Teseptimavirus YpYeO9	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ819459	Enterococcus phage PEF9	47452	39.941	Enterococcus	Group I	Saphexavirus	Saphexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis	Medium-quality	Genome-fragment	82.860	AAI-based (high-confidence)	Saphexavirus	Saphexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ819458	Enterococcus phage PEF7b	58490	39.632	Enterococcus	Group I	Saphexavirus	Saphexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Saphexavirus	Saphexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ819159	Klebsiella phage vB_KpnP_Ou2	44754	54.026	Klebsiella	Group I	Drulisvirus	Drulisvirus	Slopekvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae kp3	Complete	High-quality	100.000	DTR (high-confidence)	Drulisvirus	Drulisvirus FK1979	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic