Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
OQ845957Escherichia phage pEC-M719-6WT.18622239.471EscherichiaGroup I MooglevirusMooglevirusOunavirinaeAndersonviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli M719-6WTHigh-qualityHigh-quality97.900AAI-based (high-confidence) MooglevirusMooglevirus M7196WT1The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
OQ834936Shigella phage Henu126977939.394ShigellaGroup I OunavirinaeUnclassifiedOunavirinaeAndersonviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Shigella dysenteriae CMCC(B)51105Medium-qualityGenome-fragment79.230AAI-based (high-confidence) MooglevirusMooglevirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
OQ834252Riemerella phage vB_RanS_CRP124826934.956RiemerellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Riemerella anatipestifer RAf71High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateantirepressor orf_14;antirepressor orf_40
OQ832096Halomonas phage vB_HmeY_H49074045257.639HalomonasGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Halomonas meridianaMedium-qualityGenome-fragment89.190AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_53
OQ831730Pseudomonas phage 1096559755.003PseudomonasGroup I PbunavirusPbunavirusUnclassifiedLindbergviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality99.310AAI-based (high-confidence) PbunavirusPbunavirus pv109Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
OQ831729Pseudomonas phage E2005-C6659155.680PseudomonasGroup I PbunavirusPbunavirusUnclassifiedLindbergviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) PbunavirusPbunavirus pv141Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
OQ831052Enterococcus phage SFQ014078734.766EnterococcusGroup I EfquatrovirusEfquatrovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalisHigh-qualityHigh-quality100.000AAI-based (high-confidence) EfquatrovirusEfquatrovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
OQ830459Klebsiella phage vB_KpnS_KpLi55240753.123KlebsiellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniae KpLi5High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateparA orf_22
OQ829630Salmonella phage gd016010956.223SalmonellaGroup I ChivirusChivirusUnclassifiedCasjensviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella sp.CompleteHigh-quality100.000DTR (high-confidence) ChivirusChivirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_15
OQ829281Lundtoftevirus Lu2217639743.544UnspecifiedGroup I LundtoftevirusLundtoftevirusUnclassifiedGrimontviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality90.430AAI-based (high-confidence) LundtoftevirusLundtoftevirus Lu221Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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