INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OR204651	Escherichia phage pO103	39837	48.329	Escherichia	Group I	Berlinvirus	Berlinvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	99.730	AAI-based (high-confidence)	Berlinvirus	Berlinvirus pO103	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR204650	Escherichia phage pO91	39650	49.788	Escherichia	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	99.400	AAI-based (high-confidence)	Kayfunavirus	Kayfunavirus pO91	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OR204649	Vibrio phage PJN101	76884	42.757	Vibrio	Group I	Stoningtonvirus	Stoningtonvirus	Fuhrmanvirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Stoningtonvirus	Stoningtonvirus Pjn101	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR199846	Mycobacterium phage Azrael100	78063	56.867	Mycobacterium	Group I	Wildcatvirus	Wildcatvirus	Unclassified	Vilmaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycolicobacterium smegmatis mc(2)155	High-quality	High-quality	99.400	AAI-based (high-confidence)	Wildcatvirus	Wildcatvirus wildcat	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR199844	Lactococcus phage p2ev	32739	34.341	Lactococcus	Group I	Skunavirus	Skunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Skunavirus	Skunavirus sk1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR199843	Lactococcus phage P335ev	33593	35.487	Lactococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus sp.	High-quality	High-quality	91.560	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	cro orf_33
OR195094	Mycobacterium phage MTBP1	47655	67.231	Mycobacterium	Group I	Fishburnevirus	Fishburnevirus	Pclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium sp.	High-quality	High-quality	97.260	AAI-based (high-confidence)	Fishburnevirus	Fishburnevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_30;immunity orf_31;antirepressor orf_34;integrase orf_52
OR195050	Microbacterium phage JaimeB	17445	68.742	Microbacterium	Group I	Paopuvirus	Paopuvirus	Pelczarvirinae	Orlajensenviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	100.000	AAI-based (high-confidence)	Paopuvirus	Paopuvirus Scamander	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR195049	Arthrobacter phage RedFox	38728	66.092	Arthrobacter	Group I	Andrewvirus	Andrewvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter globiformis B-2979	High-quality	High-quality	99.830	AAI-based (high-confidence)	Andrewvirus	Andrewvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_36
OR195048	Mycobacterium phage Bombitas	110129	60.713	Mycobacterium	Group I	Omegavirus	Omegavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.260	AAI-based (high-confidence)	Omegavirus	Omegavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_70;immunity orf_83;immunity orf_172