INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR225222 | Sphingomonas phage Kimi | 43699 | 55.864 | Sphingomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sphingomonas sp. LR55 | High-quality | High-quality | 98.440 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OR220913 | Methanosarcina spherical virus | 10564 | 38.480 | Methanosarcina | Group I | Tectiviridae | Unclassified | Unclassified | Tectiviridae | Kalamavirales | Tectiliviricetes | Preplasmiviricota | Bamfordvirae | Varidnaviria | Methanosarcina mazei Go1 | Low-quality | Genome-fragment | 25.140 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OR220912 | Methanosarcina spherical virus | 10562 | 38.449 | Methanosarcina | Group I | Tectiviridae | Unclassified | Unclassified | Tectiviridae | Kalamavirales | Tectiliviricetes | Preplasmiviricota | Bamfordvirae | Varidnaviria | Methanosarcina mazei Go1 | Low-quality | Genome-fragment | 25.130 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OR220911 | Methanosarcina spherical virus | 10565 | 38.495 | Methanosarcina | Group I | Tectiviridae | Unclassified | Unclassified | Tectiviridae | Kalamavirales | Tectiliviricetes | Preplasmiviricota | Bamfordvirae | Varidnaviria | Methanosarcina mazei Go1 | Low-quality | Genome-fragment | 25.140 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OR211677 | Pseudomonas phage vB_PaM_EPA3 | 93558 | 49.316 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Pakpunavirus | Pakpunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_88 |
| OR209256 | Stenotrophomonas phage c9-N | 43170 | 59.836 | Stenotrophomonas | Group I | Smasvirus | Smasvirus | Gujervirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia c9 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Smasvirus | Smasvirus c9N | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR208619 | Pseudomonas phage vB_PaeA_SB | 43114 | 62.177 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Phikmvvirus | Phikmvvirus SB | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR208547 | Bacillus phage phi18-2 | 64467 | 47.415 | Bacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis 18 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_2;integrase orf_33 |
| OR206057 | Staphylococcus phage vB_SauS_PHM | 42634 | 33.795 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | methicillin-resistant Staphylococcus aureus | High-quality | High-quality | 91.770 | AAI-based (high-confidence) | Triavirus | Triavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_8;integrase orf_40;cro orf_43;antirepressor orf_45 |
| OR204652 | Escherichia phage pO111 | 40444 | 48.650 | Escherichia | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Teseptimavirus | Teseptimavirus pO111 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |