Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
OR420738Pelagibacter phage HTVC131P4087933.976PelagibacterGroup I PelagivirusPelagivirusUnclassifiedUnclassifiedAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Candidatus Pelagibacter sp. HTCC7211High-qualityHigh-quality97.880AAI-based (high-confidence) PelagivirusPelagivirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_8
OR420737Roseobacter phage CRP-1713979644.891RoseobacterGroup I OceanidvirusOceanidvirusUnclassifiedUnclassifiedAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paracoccaceae bacterium strain FZCC0023High-qualityHigh-quality96.200AAI-based (high-confidence) OceanidvirusOceanidvirus CRP171Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_5
OR420736Pelagibacter phage HTVC304P4054933.619PelagibacterGroup I PelagivirusPelagivirusUnclassifiedUnclassifiedAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Candidatus Pelagibacter sp.FZCC0233High-qualityHigh-quality97.120AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_9
OR420735Pelagibacter phage HTVC168P3978733.767PelagibacterGroup I PelagivirusPelagivirusUnclassifiedUnclassifiedAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Candidatus Pelagibacter sp. HTCC7211High-qualityHigh-quality95.610AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
OR420734Roseobacter phage CRP-8044162050.017RoseobacterGroup I TriteiavirusTriteiavirusUnclassifiedUnclassifiedAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paracoccaceae bacterium strain FZCC0196High-qualityHigh-quality100.000AAI-based (medium-confidence) TriteiavirusTriteiavirus CRP804Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_8
OR420712Oceanotoga phage vB_OteS-UFV025348231.422OceanotogaGroup I LutzvirusLutzvirusUnclassifiedLutzviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Oceanotoga teriensis UFV_LIMV02Medium-qualityGenome-fragment83.110AAI-based (medium-confidence) LutzvirusLutzvirus UFV02Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_21;antirepressor orf_24
OR420688Vibrio phage VRU12246037.108VibrioGroup I MohonavirusMohonavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio choleraeHigh-qualityHigh-quality92.120AAI-based (high-confidence) MohonavirusMohonavirus ICP1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_90
OR420686Shigella phage 1b4469854.497ShigellaGroup I DhillonvirusDhillonvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Shigella flexneriHigh-qualityHigh-quality100.000AAI-based (high-confidence) DhillonvirusDhillonvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
OR420333Macromonas phage BK-30P4306458.559MacromonasGroup I KrylovirinaeUnclassifiedKrylovirinaeAutoscriptoviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Macromonas sp. BK-30High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
OR413586Salmonella phage SPLA95169446.023SalmonellaGroup I RosemountvirusRosemountvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella entericaHigh-qualityHigh-quality97.690AAI-based (high-confidence) RosemountvirusRosemountvirus BP63The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
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