INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR420738 | Pelagibacter phage HTVC131P | 40879 | 33.976 | Pelagibacter | Group I | Pelagivirus | Pelagivirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter sp. HTCC7211 | High-quality | High-quality | 97.880 | AAI-based (high-confidence) | Pelagivirus | Pelagivirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_8 |
| OR420737 | Roseobacter phage CRP-171 | 39796 | 44.891 | Roseobacter | Group I | Oceanidvirus | Oceanidvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paracoccaceae bacterium strain FZCC0023 | High-quality | High-quality | 96.200 | AAI-based (high-confidence) | Oceanidvirus | Oceanidvirus CRP171 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_5 |
| OR420736 | Pelagibacter phage HTVC304P | 40549 | 33.619 | Pelagibacter | Group I | Pelagivirus | Pelagivirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter sp.FZCC0233 | High-quality | High-quality | 97.120 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_9 |
| OR420735 | Pelagibacter phage HTVC168P | 39787 | 33.767 | Pelagibacter | Group I | Pelagivirus | Pelagivirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter sp. HTCC7211 | High-quality | High-quality | 95.610 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OR420734 | Roseobacter phage CRP-804 | 41620 | 50.017 | Roseobacter | Group I | Triteiavirus | Triteiavirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paracoccaceae bacterium strain FZCC0196 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | Triteiavirus | Triteiavirus CRP804 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_8 |
| OR420712 | Oceanotoga phage vB_OteS-UFV02 | 53482 | 31.422 | Oceanotoga | Group I | Lutzvirus | Lutzvirus | Unclassified | Lutzviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Oceanotoga teriensis UFV_LIMV02 | Medium-quality | Genome-fragment | 83.110 | AAI-based (medium-confidence) | Lutzvirus | Lutzvirus UFV02 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_21;antirepressor orf_24 |
| OR420688 | Vibrio phage VRU | 122460 | 37.108 | Vibrio | Group I | Mohonavirus | Mohonavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae | High-quality | High-quality | 92.120 | AAI-based (high-confidence) | Mohonavirus | Mohonavirus ICP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_90 |
| OR420686 | Shigella phage 1b | 44698 | 54.497 | Shigella | Group I | Dhillonvirus | Dhillonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dhillonvirus | Dhillonvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR420333 | Macromonas phage BK-30P | 43064 | 58.559 | Macromonas | Group I | Krylovirinae | Unclassified | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Macromonas sp. BK-30 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OR413586 | Salmonella phage SPLA9 | 51694 | 46.023 | Salmonella | Group I | Rosemountvirus | Rosemountvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | High-quality | High-quality | 97.690 | AAI-based (high-confidence) | Rosemountvirus | Rosemountvirus BP63 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |