INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR420752 | Roseobacter phage CRP-403 | 40567 | 47.038 | Roseobacter | Group I | Shangxiadianvirus | Shangxiadianvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paracoccaceae bacterium strain FZCC0037 | High-quality | High-quality | 99.450 | AAI-based (medium-confidence) | Shangxiadianvirus | Shangxiadianvirus CRP403 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_7 |
| OR420751 | Pelagibacter phage HTVC309P | 40533 | 33.684 | Pelagibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter sp.FZCC0233 | High-quality | High-quality | 97.490 | AAI-based (high-confidence) | Foussvirus | Foussvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_9 |
| OR420750 | Roseobacter phage CRP-361 | 39084 | 48.480 | Roseobacter | Group I | Dynamenevirus | Dynamenevirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paracoccaceae bacterium strain FZCC0042 | High-quality | High-quality | 94.600 | AAI-based (high-confidence) | Dynamenevirus | Dynamenevirus CRP361 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_9 |
| OR420748 | Roseobacter phage CRP-143 | 42634 | 44.638 | Roseobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paracoccaceae bacterium strain FZCC0023 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OR420746 | Roseobacter phage CRP-227 | 39373 | 48.312 | Roseobacter | Group I | Dynamenevirus | Dynamenevirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paracoccaceae bacterium strain FZCC0040 | High-quality | High-quality | 94.540 | AAI-based (high-confidence) | Dynamenevirus | Dynamenevirus CRP227 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_9 |
| OR420745 | Pelagibacter phage HTVC048P | 42803 | 33.523 | Pelagibacter | Group I | Pelagivirus | Pelagivirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter ubique HTCC1062 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_14 |
| OR420744 | Pelagibacter phage HTVC134P | 42828 | 33.735 | Pelagibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter sp. HTCC7211 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Foussvirus | Foussvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_10 |
| OR420743 | Roseobacter phage CRP-125 | 38917 | 48.699 | Roseobacter | Group I | Actaeavirus | Actaeavirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paracoccaceae bacterium strain FZCC0023 | High-quality | High-quality | 92.660 | AAI-based (high-confidence) | Actaeavirus | Actaeavirus CRP125 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_7 |
| OR420741 | Roseobacter phage CRP-118 | 41088 | 46.352 | Roseobacter | Group I | Shangxiadianvirus | Shangxiadianvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paracoccaceae bacterium strain FZCC0023 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | Shangxiadianvirus | Shangxiadianvirus CRP118 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_5 |
| OR420740 | Roseobacter phage CRP-114 | 40413 | 48.814 | Roseobacter | Group I | Dynamenevirus | Dynamenevirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paracoccaceae bacterium strain FZCC0023 | High-quality | High-quality | 97.160 | AAI-based (high-confidence) | Dynamenevirus | Dynamenevirus CRP114 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_11 |