INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OR983332	Klebsiella phage Kpph9	43645	54.006	Klebsiella	Group I	Drulisvirus	Drulisvirus	Slopekvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	99.420	AAI-based (high-confidence)	Drulisvirus	Drulisvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR983331	Klebsiella phage Kpph1	50883	50.673	Klebsiella	Group I	Webervirus	Webervirus	Unclassified	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Webervirus	Webervirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR982685	Klebsiella phage KP-PHA-Meh	42649	53.929	Klebsiella	Group I	Drulisvirus	Drulisvirus	Slopekvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	97.140	AAI-based (high-confidence)	Drulisvirus	Drulisvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR981606	Mycobacterium phage Benzema	64522	59.704	Mycobacterium	Group I	Plotvirus	Plotvirus	Dclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycolicobacterium smegmatis mc^2 155	High-quality	High-quality	97.870	AAI-based (high-confidence)	Plotvirus	Plotvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR980947	Shigella phage Tf	89550	38.857	Shigella	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Shigella flexneri 2b	Complete	High-quality	100.000	DTR (high-confidence)	Felixounavirus	Felixounavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR979723	Escherichia phage ETEP102	48422	46.099	Escherichia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli ET03 (enterotoxigenic)	High-quality	High-quality	99.640	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
OR979722	Escherichia phage ETEP21B	39424	49.087	Escherichia	Group I	Berlinvirus	Berlinvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli ET14 (enterotoxigenic)	Complete	High-quality	100.000	DTR (high-confidence)	Berlinvirus	Berlinvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR978128	Salmonella phage Vb_SalP_792	37281	50.892	Salmonella	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica	Complete	High-quality	100.000	DTR (high-confidence)	Kayfunavirus	Kayfunavirus ST15	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OR974322	Escherichia phage Lambda	48496	49.843	Escherichia	Group I	Lambdavirus	Lambdavirus	Jacobvirinae	Zimmerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lambdavirus	Lambdavirus lambda	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_28;cro orf_45;cro orf_46
OR966858	Xanthomonas phage NP1	43329	52.383	Xanthomonas	Group I	Xipdecavirus	Xipdecavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas oryzae pv. oryzae	High-quality	High-quality	97.960	AAI-based (high-confidence)	Xipdecavirus	Xipdecavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic