INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

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Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PZ168742	Corynebacterium phage vB_CpsM_E3	31428	42.373	Corynebacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Corynebacterium pseudotuberculosis 1089	Medium-quality	Genome-fragment	58.350	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_15
PZ168741	Corynebacterium phage vB_CpsM_H	42973	42.029	Corynebacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Corynebacterium pseudotuberculosis 1463	Medium-quality	Genome-fragment	55.600	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_27
PZ168309	Bacillus phage BAP-16	44237	44.628	Bacillus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Bacillus amyloliquefaciens	High-quality	High-quality	100.000	AAI-based (high-confidence)	Splendidredvirus	Splendidredvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_72
PZ168308	Klebsiella phage PL3	60985	55.568	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella pneumoniae KP-L9	High-quality	High-quality	100.000	AAI-based (high-confidence)	Yonseivirus	Yonseivirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_47
PZ168289	Escherichia phage vB_EcoP_D1	39017	49.896	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli	High-quality	High-quality	98.080	AAI-based (high-confidence)	Kayfunavirus	Kayfunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PZ168283	Vibrio phage ctg1	10374	43.214	Vibrio	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Vibrio splendidus	Low-quality	Genome-fragment	16.460	HMM-based (lower-bound)	Ameliavirus	Ameliavirus viph1008o	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ166807	Lactiplantibacillus phage P4_HS	75801	39.299	Lactiplantibacillus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Lactiplantibacillus plantarum IMAU14010	High-quality	High-quality	95.360	AAI-based (high-confidence)	Maenadvirus	Maenadvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31
PZ166806	Lactiplantibacillus phage P3_HS	68160	39.315	Lactiplantibacillus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Lactiplantibacillus plantarum IMAU12236	Medium-quality	Genome-fragment	85.730	AAI-based (high-confidence)	Maenadvirus	Maenadvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_59
PZ166801	Staphylococcus phage vB_ShyM_BQL4	115356	30.401	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus hyicus SC361	Medium-quality	Genome-fragment	81.410	AAI-based (high-confidence)	Twortvirus	Twortvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_33
PZ166800	Staphylococcus phage vB_ShyM_BQE7	132467	30.258	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus hyicus SC386	High-quality	High-quality	93.400	AAI-based (high-confidence)	Twortvirus	Twortvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_137