INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
FJ174693	Mycobacterium phage Ramsey	58578	61.219	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus ramsey	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_42;immunity orf_44
FJ174694	Mycobacterium phage Chah	68450	66.498	Mycobacterium	Group I	Pegunavirus	Pegunavirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.520	AAI-based (high-confidence)	Pegunavirus	Pegunavirus Pg1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
FJ184280	Enterobacteria phage YYZ-2008	54896	51.115	Enterobacteria	Group I	Pankowvirus	Pankowvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pankowvirus	Pankowvirus YYZ2008	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_2;cro orf_24;cro orf_25;antirepressor orf_46;antirepressor orf_68
FJ188381	Stx2-converting phage 1717	62147	50.915	Unspecified	Group I	Pankowvirus	Pankowvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pankowvirus	Pankowvirus pv1717	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_2;cro orf_24;cro orf_25;antirepressor orf_39;antirepressor orf_79
FJ194439	Kluyvera phage Kvp1	39472	48.642	Kluyvera	Group I	Berlinvirus	Berlinvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	DTR (high-confidence)	Berlinvirus	Berlinvirus Kvp1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
FJ226752	Streptococcus phage ALQ13.2	35525	39.395	Streptococcus	Group I	Brussowvirus	Brussowvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	93.190	AAI-based (high-confidence)	Brussowvirus	Brussowvirus ALQ132	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_29;cro orf_31
FJ230960	Bacillus phage SPO1	132562	39.965	Bacillus	Group I	Okubovirus	Okubovirus	Spounavirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus subtilis	High-quality	High-quality	90.410	AAI-based (high-confidence)	Okubovirus	Okubovirus SPO1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
FJ236310	Streptococcus phage Abc2	34882	38.986	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	94.690	AAI-based (high-confidence)	Moineauvirus	Moineauvirus Abc2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_25
FJ373894	Shigella phage Ag3	158006	50.398	Shigella	Group I	Agtrevirus	Agtrevirus	Aglimvirinae	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Shigella boydii	High-quality	High-quality	99.990	AAI-based (high-confidence)	Agtrevirus	Agtrevirus AG3	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
FJ409640	Vibrio phage N4	38497	42.803	Vibrio	Group I	Chatterjeevirus	Chatterjeevirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	97.250	AAI-based (high-confidence)	Chatterjeevirus	Chatterjeevirus N4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic