INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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Genus (TaxMyPhage)

CheckV quality

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
EU982300	Pseudomonas phage DVM-2008	22689	59.425	Pseudomonas	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas fluorescens Q8r1-96	Medium-quality	Genome-fragment	59.100	AAI-based (medium-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
FJ000341	Salmonella phage g341c	40975	47.402	Salmonella	Group I	Lederbergvirus	Lederbergvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Anatum	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_16;cro orf_37;cro orf_38
FJ008913	Bacteroides phage B40-8	44929	38.628	Bacteroides	Group I	Gotuavirus	Gotuavirus	Cardingvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacteroides fragilis HSP40 (ATCC 51477)	High-quality	High-quality	96.840	AAI-based (high-confidence)	Gotuavirus	Gotuavirus B408	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_33;antirepressor orf_38
FJ168659	Mycobacterium phage Brujita	47057	66.772	Mycobacterium	Group I	Brujitavirus	Brujitavirus	Chebruvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.070	AAI-based (high-confidence)	Brujitavirus	Brujitavirus brujita	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_33;antirepressor orf_35
FJ168660	Mycobacterium phage Butterscotch	64562	59.674	Mycobacterium	Group I	Plotvirus	Plotvirus	Dclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.900	AAI-based (high-confidence)	Plotvirus	Plotvirus plot	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
FJ168661	Mycobacterium phage Gumball	64807	59.554	Mycobacterium	Group I	Plotvirus	Plotvirus	Dclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.280	AAI-based (high-confidence)	Plotvirus	Plotvirus plot	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
FJ168662	Mycobacterium phage Troll4	64618	59.612	Mycobacterium	Group I	Plotvirus	Plotvirus	Dclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.990	AAI-based (high-confidence)	Plotvirus	Plotvirus plot	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
FJ174690	Mycobacterium phage Fruitloop	58471	61.773	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus fruitloop	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_37;integrase orf_41;cro orf_46;antirepressor orf_47
FJ174691	Mycobacterium phage Konstantine	68952	57.337	Mycobacterium	Group I	Konstantinevirus	Konstantinevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.240	AAI-based (high-confidence)	Konstantinevirus	Konstantinevirus konstantine	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
FJ174692	Mycobacterium phage Pacc40	58554	61.263	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus pacc40	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_37;immunity orf_39